Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04729 and RBAM_005780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_04729___paiB.1.9828.seq
# -bsequence dna-align/RBAM_005780.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04729___paiB-RBAM_005780.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04729___paiB-RBAM_005780.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04729___paiB
# 2: RBAM_005780
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity: 364/744 (48.9%)
# Similarity: 364/744 (48.9%)
# Gaps: 243/744 (32.7%)
# Score: 720.5
#
#
#=======================================
BSNT_04729___ 1 ATGTATAT------TCCAAAATATTTTAA----AGTCACAAATGCTGAAG 40
|||||||| |||| |||.| ||| .|.|||||||
RBAM_005780 1 ATGTATATTCCGGCTCCA------TTTCAGCTGAGT----GAAGCTGAAG 40
BSNT_04729___ 41 AAATTTGGAATTTTGTACAAGAAAACTCCTTTGGTACGGTTGTCACAACA 90
..||..||.|..|..|||| |||.|||| ||.||.||
RBAM_005780 41 ---CGTGCGATGTCATCAAAGA-----------GTATGGTT-TCGCAGCA 75
BSNT_04729___ 91 -------GAAC-----AAGGAAAACCAATTGCCACACATTTGCCGTTAGG 128
.||| ||||.||.||...|||.||.|||.||||.|| |
RBAM_005780 76 TTGTTTTCAACGGCGGAAGGCAAGCCGTATGCAACCCATCTGCCATT--G 123
BSNT_04729___ 129 AT--TCAATAAAAAAGACG-ATCATTACTATATTACGGGGCATTTCGCTT 175
|| |.|.|||.||..||| ||..||| ||| ||.|||||.||
RBAM_005780 124 ATGATGAGTAAGAATAACGAATGCTTA------TAC-GGTCATTTTGC-- 164
BSNT_04729___ 176 ATGG--AAATCCTCAGTGGAGAACGTTTGA-AGCCTGTGAAGATGTGCTT 222
||.| .||.||.||.||||.|..|.|||| .||| ||.|.|||.|.
RBAM_005780 165 ATTGCCGAACCCCCAATGGAAAGAGATTGATGGCC----AAAACGTGTTA 210
BSNT_04729___ 223 GTGATGTTTCAGGGACCGCACGCTTATATTTCTTCTTCCTGGTAT----- 267
|...|.|||||.||.||.||...||||||.||..||...||||||
RBAM_005780 211 GCCGTTTTTCAAGGGCCTCATTGTTATATCTCGCCTAAATGGTATGAGAC 260
BSNT_04729___ 268 ---TCGCGCGAAAATGTTCCGACGTGGAATTATCAGGCTGTCCACATGTA 314
||..|| |||.||.||.|||||||||..|||.||.||..|.||
RBAM_005780 261 GAATCAGGC-----TGTACCCACTTGGAATTATGTGGCGGTTCATGTTTA 305
BSNT_04729___ 315 TGGAAAAGCAAGTATGTTAGAGAAAGATGAATTAGCAGAAGAATTAACAA 364
.|||.|.|| |.|..|| .||.||.|| ||||| ||
RBAM_005780 306 CGGAGAGGC--GGAGCTT--------TTGGATGAG--GAAGA------AA 337
BSNT_04729___ 365 TCATGCTG---------GA---------GAAATACGAAA-----AACA-- 389
.|.|||.| || ||||||||||| .|||
RBAM_005780 338 CCGTGCAGTCGATGAGTGATCTCGTATTGAAATACGAAAGCCCCGACAGC 387
BSNT_04729___ 390 TCGTGACAATCCTGTTTTATGGGATAAGCTTTC--TCCAAAACTCTTAGA 437
.||| |||| .|||..||| |.|| |.|.|||.|..|.|.
RBAM_005780 388 CCGT-ACAA------ATTAGAGGA-----TGTCGATGCGAAATTGCTGGC 425
BSNT_04729___ 438 A--CGTGAA-------TTGAAAGGTATCGTTGGATTTAAGATTAAGGTGG 478
| |.|||| .|.|||||| |||||.||.||
RBAM_005780 426 AGGCATGAACAAAGGGGTAAAAGGT---------TTTAAAATCAA----- 461
BSNT_04729___ 479 AAGATATTCAAGCGGCATATAAATTAAGCCAGAACCGAAATGAAA-CGGA 527
||.|.||| |||| |||...||||..||| |.||
RBAM_005780 462 ---------AATCAGCA---AAAT------AGAGGGGAAAGCAAAGCTGA 493
BSNT_04729___ 528 TTATATGAACATTATTGAACAGTTGCAAAA-------TG----------- 559
.|.||.||.||| |||.|||||.| ||
RBAM_005780 494 ----GTCAAAATCATT---CAGCTGCAAGACAAGGGCTGGTCGTACAACA 536
BSNT_04729___ 560 -----AAGAAAATCCAAATGCAAAACAAATGGCAGAAC----------TG 594
||.|.|.|||..||.||||..|| |||..| ||
RBAM_005780 537 GCTCAAACAGATTCCTCATACAAACGAA----CAGCTCATTTCCGGCTTG 582
BSNT_04729___ 595 ATGGAAAATAAATTCAAAAAGCAAATATAA-------------- 624
||||||.|.||..|||||..| ||.|
RBAM_005780 583 ATGGAAGAAAACATCAAACGG-----ATCACTGCGAACAACTGA 621
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