Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04729 and RBAM_005780

See Amino acid alignment / Visit BSNT_04729 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence dna-align/BSNT_04729___paiB.1.9828.seq
#    -bsequence dna-align/RBAM_005780.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04729___paiB-RBAM_005780.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04729___paiB-RBAM_005780.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04729___paiB
# 2: RBAM_005780
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity:     364/744 (48.9%)
# Similarity:   364/744 (48.9%)
# Gaps:         243/744 (32.7%)
# Score: 720.5
# 
#
#=======================================

BSNT_04729___      1 ATGTATAT------TCCAAAATATTTTAA----AGTCACAAATGCTGAAG     40
                     ||||||||      ||||      |||.|    |||    .|.|||||||
RBAM_005780        1 ATGTATATTCCGGCTCCA------TTTCAGCTGAGT----GAAGCTGAAG     40

BSNT_04729___     41 AAATTTGGAATTTTGTACAAGAAAACTCCTTTGGTACGGTTGTCACAACA     90
                        ..||..||.|..|..||||           |||.|||| ||.||.||
RBAM_005780       41 ---CGTGCGATGTCATCAAAGA-----------GTATGGTT-TCGCAGCA     75

BSNT_04729___     91 -------GAAC-----AAGGAAAACCAATTGCCACACATTTGCCGTTAGG    128
                            .|||     ||||.||.||...|||.||.|||.||||.||  |
RBAM_005780       76 TTGTTTTCAACGGCGGAAGGCAAGCCGTATGCAACCCATCTGCCATT--G    123

BSNT_04729___    129 AT--TCAATAAAAAAGACG-ATCATTACTATATTACGGGGCATTTCGCTT    175
                     ||  |.|.|||.||..||| ||..|||      ||| ||.|||||.||  
RBAM_005780      124 ATGATGAGTAAGAATAACGAATGCTTA------TAC-GGTCATTTTGC--    164

BSNT_04729___    176 ATGG--AAATCCTCAGTGGAGAACGTTTGA-AGCCTGTGAAGATGTGCTT    222
                     ||.|  .||.||.||.||||.|..|.|||| .|||    ||.|.|||.|.
RBAM_005780      165 ATTGCCGAACCCCCAATGGAAAGAGATTGATGGCC----AAAACGTGTTA    210

BSNT_04729___    223 GTGATGTTTCAGGGACCGCACGCTTATATTTCTTCTTCCTGGTAT-----    267
                     |...|.|||||.||.||.||...||||||.||..||...||||||     
RBAM_005780      211 GCCGTTTTTCAAGGGCCTCATTGTTATATCTCGCCTAAATGGTATGAGAC    260

BSNT_04729___    268 ---TCGCGCGAAAATGTTCCGACGTGGAATTATCAGGCTGTCCACATGTA    314
                        ||..||     |||.||.||.|||||||||..|||.||.||..|.||
RBAM_005780      261 GAATCAGGC-----TGTACCCACTTGGAATTATGTGGCGGTTCATGTTTA    305

BSNT_04729___    315 TGGAAAAGCAAGTATGTTAGAGAAAGATGAATTAGCAGAAGAATTAACAA    364
                     .|||.|.||  |.|..||        .||.||.||  |||||      ||
RBAM_005780      306 CGGAGAGGC--GGAGCTT--------TTGGATGAG--GAAGA------AA    337

BSNT_04729___    365 TCATGCTG---------GA---------GAAATACGAAA-----AACA--    389
                     .|.|||.|         ||         |||||||||||     .|||  
RBAM_005780      338 CCGTGCAGTCGATGAGTGATCTCGTATTGAAATACGAAAGCCCCGACAGC    387

BSNT_04729___    390 TCGTGACAATCCTGTTTTATGGGATAAGCTTTC--TCCAAAACTCTTAGA    437
                     .||| ||||      .|||..|||     |.||  |.|.|||.|..|.|.
RBAM_005780      388 CCGT-ACAA------ATTAGAGGA-----TGTCGATGCGAAATTGCTGGC    425

BSNT_04729___    438 A--CGTGAA-------TTGAAAGGTATCGTTGGATTTAAGATTAAGGTGG    478
                     |  |.||||       .|.||||||         |||||.||.||     
RBAM_005780      426 AGGCATGAACAAAGGGGTAAAAGGT---------TTTAAAATCAA-----    461

BSNT_04729___    479 AAGATATTCAAGCGGCATATAAATTAAGCCAGAACCGAAATGAAA-CGGA    527
                              ||.|.|||   ||||      |||...||||..||| |.||
RBAM_005780      462 ---------AATCAGCA---AAAT------AGAGGGGAAAGCAAAGCTGA    493

BSNT_04729___    528 TTATATGAACATTATTGAACAGTTGCAAAA-------TG-----------    559
                         .|.||.||.|||   |||.|||||.|       ||           
RBAM_005780      494 ----GTCAAAATCATT---CAGCTGCAAGACAAGGGCTGGTCGTACAACA    536

BSNT_04729___    560 -----AAGAAAATCCAAATGCAAAACAAATGGCAGAAC----------TG    594
                          ||.|.|.|||..||.||||..||    |||..|          ||
RBAM_005780      537 GCTCAAACAGATTCCTCATACAAACGAA----CAGCTCATTTCCGGCTTG    582

BSNT_04729___    595 ATGGAAAATAAATTCAAAAAGCAAATATAA--------------    624
                     ||||||.|.||..|||||..|     ||.|              
RBAM_005780      583 ATGGAAGAAAACATCAAACGG-----ATCACTGCGAACAACTGA    621


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.