Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01170 and RBAM_005330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_01170___yezE.1.9828.seq
# -bsequence dna-align/RBAM_005330.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01170___yezE-RBAM_005330.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01170___yezE-RBAM_005330.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01170___yezE
# 2: RBAM_005330
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity: 336/709 (47.4%)
# Similarity: 336/709 (47.4%)
# Gaps: 257/709 (36.2%)
# Score: 612.5
#
#
#=======================================
BSNT_01170___ 1 TTGGGGAGGAATAAAGAATTTGAT------ACGGC----------GC--T 32
.|||..||.||||||||||||||| |.||| || |
RBAM_005330 1 ATGGCTAGAAATAAAGAATTTGATGAAAAGAAGGCATTAAGAAAAGCAAT 50
BSNT_01170___ 33 TGTTCTTCACAGGGCGATAGAGGTTTTTGGAGAGTATGGCTACGAAGGAA 82
..|||| ||||||| ||..|.|||||.|||..||
RBAM_005330 51 GATTCT-----------------TTTTTGG-GAACAGGGCTATGAAAAAA 82
BSNT_01170___ 83 CGTCTCTTCAGGATCTGCTCTCTCATTTAGGCATTGCGCGCCAAAGTTTG 132
|.||..|.||.||..||.|...||||.|.|||.||...|||..||||.|.
RBAM_005330 83 CATCCATGCAAGACTTGGTGGATCATATGGGCGTTCACCGCAGAAGTATT 132
BSNT_01170___ 133 TATGATACGTATGGC-ACGAAGCGTGATTTGTTTTTGTCCGCTGTGAAAA 181
||||||||.|.|||| || ||.|.|..|||.|||.||
RBAM_005330 133 TATGATACATTTGGCGAC-AAACATACTTTATTTATG------------- 168
BSNT_01170___ 182 CGTATCTTGAAGGGAAAAACACTGCCGTTATG----------GAAAGGC- 220
||..|||| |||.|| ||||| |.|||||
RBAM_005330 169 CGAGTCTT-------AAATCA------TTATGTAGAAATAATGGAAGGCC 205
BSNT_01170___ 221 ---------TTGAATCG---CCAGGAT---CTGTAAAGGAAGCCATTCGT 255
.||||..| .|||.|| |.||.|||.|..|.||.||
RBAM_005330 206 GAATGAAGAATGAAGTGAAAACAGAATTAACAGTGAAGCAGTCGATACG- 254
BSNT_01170___ 256 AATATT-TTTCAAGAAGGTGTCAATGCTTTGAGGGATCCTGAACGGGCG- 303
||.||| |||.|| |.|||| |.||.||.|| |..|||.|..|
RBAM_005330 255 AAAATTATTTGAA-ATGGTG--ATTGATTCGA------CACAACAGCAGC 295
BSNT_01170___ 304 ---AAGGCGTGCTATATC-ATTAA--CAGCGCGATTGAACAGATTCCGCA 347
|||| ||| |.||.| .|||| ||||
RBAM_005330 296 CAAAAGG-GTG-TTTAGCTGTTAATGCAGC-------------------- 323
BSNT_01170___ 348 TGACCCTGAGCTTGCCCGGTATTT--TGACAGACAATCCAAGCAGCTTG- 394
|| .||||.|..||| ||.|| ||| || |||.||| |
RBAM_005330 324 TG---TTGAGTTATCCC--TAATTGATGA-AG-------AAGTAGC--GA 358
BSNT_01170___ 395 -----AGGAC---GCTTTTTAT-----CAGGCGCTTT------------- 418
|.||| |.||||||| |||..||.||
RBAM_005330 359 AAAAAACGACAGAGATTTTTATAAATACAGAAGCCTTATTATTTGATCTG 408
BSNT_01170___ 419 -TAA-----GGGCGAAGGATCAAGGAGAATTGAATGGCGAAGATACTGAT 462
||| ||.| |.||||||||.|| |||..|.|| |.
RBAM_005330 409 CTAAAACATGGTC--AAGATCAAGGTGA----AATTCCTAA-------AC 445
BSNT_01170___ 463 ATAACTGCGCTTGCCCGTTACCTGA-ATCAAAGCAGGCTGTCTCTGACAT 511
|.|| ||| ||||||| ||||.|||| .||
RBAM_005330 446 ACAA------------------TGACATCAAAG--GGCTTTCTC---AAT 472
BSNT_01170___ 512 TTGTTGC---------------GAA----AGT------------GACGGC 530
||.|| | ||| ||| |||...
RBAM_005330 473 TTATT-CATAATTCACTCGTAGGAATACGAGTATTAACAAAAACGACAAA 521
BSNT_01170___ 531 TGATATGGATCGGCTTCAGAACCA----TGTTGACGTGAGTTTATCAGTG 576
|||||..|| |...|.|||| | |.||.|..|.|.|||.||....
RBAM_005330 522 TGATAAAGA--GAAATTAGAA--AGTATTATTAATTTCACTTTGTCGACA 567
BSNT_01170___ 577 CTTGATTAA 585
||.||.|||
RBAM_005330 568 CTAGACTAA 576
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