Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01170 and RBAM_005330

See Amino acid alignment / Visit BSNT_01170 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_01170___yezE.1.9828.seq
#    -bsequence dna-align/RBAM_005330.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01170___yezE-RBAM_005330.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01170___yezE-RBAM_005330.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01170___yezE
# 2: RBAM_005330
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 709
# Identity:     336/709 (47.4%)
# Similarity:   336/709 (47.4%)
# Gaps:         257/709 (36.2%)
# Score: 612.5
# 
#
#=======================================

BSNT_01170___      1 TTGGGGAGGAATAAAGAATTTGAT------ACGGC----------GC--T     32
                     .|||..||.|||||||||||||||      |.|||          ||  |
RBAM_005330        1 ATGGCTAGAAATAAAGAATTTGATGAAAAGAAGGCATTAAGAAAAGCAAT     50

BSNT_01170___     33 TGTTCTTCACAGGGCGATAGAGGTTTTTGGAGAGTATGGCTACGAAGGAA     82
                     ..||||                 ||||||| ||..|.|||||.|||..||
RBAM_005330       51 GATTCT-----------------TTTTTGG-GAACAGGGCTATGAAAAAA     82

BSNT_01170___     83 CGTCTCTTCAGGATCTGCTCTCTCATTTAGGCATTGCGCGCCAAAGTTTG    132
                     |.||..|.||.||..||.|...||||.|.|||.||...|||..||||.|.
RBAM_005330       83 CATCCATGCAAGACTTGGTGGATCATATGGGCGTTCACCGCAGAAGTATT    132

BSNT_01170___    133 TATGATACGTATGGC-ACGAAGCGTGATTTGTTTTTGTCCGCTGTGAAAA    181
                     ||||||||.|.|||| || ||.|.|..|||.|||.||             
RBAM_005330      133 TATGATACATTTGGCGAC-AAACATACTTTATTTATG-------------    168

BSNT_01170___    182 CGTATCTTGAAGGGAAAAACACTGCCGTTATG----------GAAAGGC-    220
                     ||..||||       |||.||      |||||          |.||||| 
RBAM_005330      169 CGAGTCTT-------AAATCA------TTATGTAGAAATAATGGAAGGCC    205

BSNT_01170___    221 ---------TTGAATCG---CCAGGAT---CTGTAAAGGAAGCCATTCGT    255
                              .||||..|   .|||.||   |.||.|||.|..|.||.|| 
RBAM_005330      206 GAATGAAGAATGAAGTGAAAACAGAATTAACAGTGAAGCAGTCGATACG-    254

BSNT_01170___    256 AATATT-TTTCAAGAAGGTGTCAATGCTTTGAGGGATCCTGAACGGGCG-    303
                     ||.||| |||.|| |.||||  |.||.||.||      |..|||.|..| 
RBAM_005330      255 AAAATTATTTGAA-ATGGTG--ATTGATTCGA------CACAACAGCAGC    295

BSNT_01170___    304 ---AAGGCGTGCTATATC-ATTAA--CAGCGCGATTGAACAGATTCCGCA    347
                        |||| ||| |.||.| .||||  ||||                    
RBAM_005330      296 CAAAAGG-GTG-TTTAGCTGTTAATGCAGC--------------------    323

BSNT_01170___    348 TGACCCTGAGCTTGCCCGGTATTT--TGACAGACAATCCAAGCAGCTTG-    394
                     ||   .||||.|..|||  ||.||  ||| ||       |||.|||  | 
RBAM_005330      324 TG---TTGAGTTATCCC--TAATTGATGA-AG-------AAGTAGC--GA    358

BSNT_01170___    395 -----AGGAC---GCTTTTTAT-----CAGGCGCTTT-------------    418
                          |.|||   |.|||||||     |||..||.||             
RBAM_005330      359 AAAAAACGACAGAGATTTTTATAAATACAGAAGCCTTATTATTTGATCTG    408

BSNT_01170___    419 -TAA-----GGGCGAAGGATCAAGGAGAATTGAATGGCGAAGATACTGAT    462
                      |||     ||.|  |.||||||||.||    |||..|.||       |.
RBAM_005330      409 CTAAAACATGGTC--AAGATCAAGGTGA----AATTCCTAA-------AC    445

BSNT_01170___    463 ATAACTGCGCTTGCCCGTTACCTGA-ATCAAAGCAGGCTGTCTCTGACAT    511
                     |.||                  ||| |||||||  ||||.||||   .||
RBAM_005330      446 ACAA------------------TGACATCAAAG--GGCTTTCTC---AAT    472

BSNT_01170___    512 TTGTTGC---------------GAA----AGT------------GACGGC    530
                     ||.|| |               |||    |||            |||...
RBAM_005330      473 TTATT-CATAATTCACTCGTAGGAATACGAGTATTAACAAAAACGACAAA    521

BSNT_01170___    531 TGATATGGATCGGCTTCAGAACCA----TGTTGACGTGAGTTTATCAGTG    576
                     |||||..||  |...|.||||  |    |.||.|..|.|.|||.||....
RBAM_005330      522 TGATAAAGA--GAAATTAGAA--AGTATTATTAATTTCACTTTGTCGACA    567

BSNT_01170___    577 CTTGATTAA    585
                     ||.||.|||
RBAM_005330      568 CTAGACTAA    576


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