Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00802 and RBAM_005050

See Amino acid alignment / Visit BSNT_00802 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence dna-align/BSNT_00802___rsbV.1.9828.seq
#    -bsequence dna-align/RBAM_005050___rsbV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00802___rsbV-RBAM_005050___rsbV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00802___rsbV-RBAM_005050___rsbV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00802___rsbV
# 2: RBAM_005050___rsbV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity:     261/340 (76.8%)
# Similarity:   261/340 (76.8%)
# Gaps:          20/340 ( 5.9%)
# Score: 992.5
# 
#
#=======================================

BSNT_00802___      1 ATGAATATAAATGTTGATGTGAAGCAAAACGAGAAT------GATATACA     44
                     ||||||.|||..||.|||.|||||      ||||||      ||||||||
RBAM_005050__      1 ATGAATTTAACGGTAGATATGAAG------GAGAATCTTTCAGATATACA     44

BSNT_00802___     45 AGTAAACATTGCAGGAGAAATTGATGTATACTCAGCCCCGGTGCTTAGAG     94
                     |.|.||.||.||.||||||||.||||||||||||||.||||||.||.|.|
RBAM_005050__     45 AATCAATATCGCTGGAGAAATCGATGTATACTCAGCTCCGGTGGTTCGTG     94

BSNT_00802___     95 AGAAGCTCGTTCCTCTGGCAGAACAAGG---AGCTGACTTAAGAATTTGC    141
                     |.|||||..|.||.|||||| |||.|||   ||  |||.|.|||||.|||
RBAM_005050__     95 AAAAGCTGATGCCCCTGGCA-AACGAGGGGAAG--GACATGAGAATCTGC    141

BSNT_00802___    142 CTGAAAGATGTCAGCTACATGGACAGTACCGGATTGGGCGTTTTTGTAGG    191
                     .|.||||||||.|..||.|||||||||||.||.||.||||||||||||||
RBAM_005050__    142 TTAAAAGATGTAAATTATATGGACAGTACGGGTTTAGGCGTTTTTGTAGG    191

BSNT_00802___    192 GACCTTTAAAATGGTGAAAAAACAAGGTGGTTCGCTGAAACTTGAAAATC    241
                     ....|||||||.|||||..||..||||.||.||.||.||.|||||.||||
RBAM_005050__    192 CGTGTTTAAAACGGTGAGCAAGGAAGGCGGCTCTCTCAAGCTTGAGAATC    241

BSNT_00802___    242 TTTCTGAACGGCTGATCCGACTGTTTGACATTAC-AGGCTTGAAGGACAT    290
                     ||||.||.|||||..||||.||||||||.||||| .||||| ||||||||
RBAM_005050__    242 TTTCCGACCGGCTCGTCCGTCTGTTTGAAATTACGGGGCTT-AAGGACAT    290

BSNT_00802___    291 CATTGATATTTCTGCAAAGTCAGAAGGTGGAGTGCAATGA    330
                     |||.||.|||||.|||||||||||||||||.|||||||||
RBAM_005050__    291 CATCGACATTTCGGCAAAGTCAGAAGGTGGCGTGCAATGA    330


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