Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00798 and RBAM_005010

See Amino acid alignment / Visit BSNT_00798 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence dna-align/BSNT_00798___rsbR.1.9828.seq
#    -bsequence dna-align/RBAM_005010___rsbR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00798___rsbR-RBAM_005010___rsbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00798___rsbR-RBAM_005010___rsbR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00798___rsbR
# 2: RBAM_005010___rsbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity:     626/849 (73.7%)
# Similarity:   626/849 (73.7%)
# Gaps:          51/849 ( 6.0%)
# Score: 2275.5
# 
#
#=======================================

BSNT_00798___      1 TTGATGTCGAATCAGACTGTATACCAGTTCATTGCCGAAAATCAAAATGA     50
                        |||||||||||||..||.||.||||||||....||..|.||..||||
RBAM_005010__      1 ---ATGTCGAATCAGAAAGTGTATCAGTTCATCATTGATCAGCATGATGA     47

BSNT_00798___     51 ACTGCTCCAATTG-----TGGACTGACACACTAAAAGAATTAAGCGAGCA     95
                     |||||     |||     |||||.|.||.||||||||||.||.||.|.||
RBAM_005010__     48 ACTGC-----TTGATACTTGGACAGCCAAACTAAAAGAAGTAGGCAATCA     92

BSNT_00798___     96 AGAATCCTATCAGCTGACTGACCAAGTGTATGAAAATATATCTAAAGAAT    145
                     .|||..|||||||||.||..|.||..|.|.|||||||||.|.||||||.|
RBAM_005010__     93 GGAAGACTATCAGCTTACGAATCACATATGTGAAAATATTTGTAAAGACT    142

BSNT_00798___    146 ATATCGACATTCTGCTGCTGTCTGTTAAGGACGAAA-------ACGCTGC    188
                     ||||.||||||||       |.|.|||..|||.|||       |.||..|
RBAM_005010__    143 ATATAGACATTCT-------TTTATTATCGACTAAAAATGACGAGGCCAC    185

BSNT_00798___    189 TGAA-AGCCAAATCAGCGAACTGGCGCTTCGAGCAGTCCAAATCGGACTG    237
                     .||| || ||.|||||.|||||.||.||.||.||.||.||..||||.|||
RBAM_005010__    186 GGAAGAG-CAGATCAGTGAACTCGCACTGCGCGCCGTTCAGCTCGGCCTG    234

BSNT_00798___    238 TCTATGAA---GTTTTTGGCTACTGCGCTTG-CTGAATTCTGGAAGCGTC    283
                     ||..||||   ..|||..||.||    |.|| |.||.||.|||||.|..|
RBAM_005010__    235 TCACTGAAACTTCTTTCAGCCAC----CCTGTCAGAGTTTTGGAAACTGC    280

BSNT_00798___    284 TCTACACGAAA--ATGAATGA---TAAGAGATTGCCAGATCA--AGAGAG    326
                     |.|  ||||||  |||...||   |||.|   ||.|.|||||  |.||||
RBAM_005010__    281 TTT--ACGAAACGATGGTCGACCTTAATA---TGGCCGATCAGGACAGAG    325

BSNT_00798___    327 CACGGAATTAATCTGGCAGATTGACCGCTTTTTCAGCCCGATTAACACAG    376
                     ||  ||.||.||.|.|.|.||.|||.|||||||||..|||||.|||||.|
RBAM_005010__    326 CA--GATTTGATTTTGGAAATAGACAGCTTTTTCAATCCGATCAACACGG    373

BSNT_00798___    377 AAATTTTTAATCAATACTCAATCTCATGGGAAAAAACAGTATCTCTGCAA    426
                     ||||.||.|||||.||.||.|||||.|||||||||||.||..||.|||||
RBAM_005010__    374 AAATCTTAAATCAGTATTCTATCTCCTGGGAAAAAACGGTTACTTTGCAA    423

BSNT_00798___    427 AAAATCGCACTGCAAGAGCTGTCTGCCCCGCTTATCCCGGTGTTTGAAAA    476
                     ||||||||.||.||.||..||||.||.|||||.||||||||.|||||..|
RBAM_005010__    424 AAAATCGCGCTTCAGGAATTGTCGGCTCCGCTGATCCCGGTATTTGAGCA    473

BSNT_00798___    477 TATCACTGTGATGCCTCTTGTCGGAACAATTGATACCGAACGCGCGAAAC    526
                     |.|.||.||.|||||.||||||||.||.||||||||.||.||.||.||.|
RBAM_005010__    474 TGTAACGGTCATGCCGCTTGTCGGGACGATTGATACGGAGCGTGCAAAGC    523

BSNT_00798___    527 GAATTATGGAAAACCTTCTTAATGGCGTCGTCAAACACCGTTCCCAAGTC    576
                     ..|||||||||||.||..|.||.||||||||.||.||||||||.||.||.
RBAM_005010__    524 ACATTATGGAAAATCTGTTAAACGGCGTCGTAAAGCACCGTTCACAGGTT    573

BSNT_00798___    577 GTGCTGATTGACATTACAGGTGTCCCTGTCGTCGATACGATGGTTGCCCA    626
                     ||..|.|||||.||.||.||.||.||.|||||.|||||||||||.||.||
RBAM_005010__    574 GTATTAATTGATATCACGGGCGTGCCGGTCGTTGATACGATGGTGGCGCA    623

BSNT_00798___    627 TCATATTATTCAGGCATCAGAAGCTGTAAGGCTTGTCGGAGCAAAATGCC    676
                     .|||||||||||||||||||||||.||..||||||||||.||.|||||||
RBAM_005010__    624 CCATATTATTCAGGCATCAGAAGCGGTGCGGCTTGTCGGCGCGAAATGCC    673

BSNT_00798___    677 TGCTGGCCGGAATCCGTCCGGAAATTGCTCAAACAATCGTCAACCTGGGG    726
                     ||||.|.||||||||||||||||||.||.||.||.|||||.||.|||||.
RBAM_005010__    674 TGCTCGTCGGAATCCGTCCGGAAATCGCGCAGACGATCGTTAATCTGGGA    723

BSNT_00798___    727 ATTGATTTATCCCAAGTTATAACTAAGAATACCCTGCAAAAAGGAATTCA    776
                     ||||||||.||.||.|||||.||.|||||||||||.||||||||||||||
RBAM_005010__    724 ATTGATTTGTCGCAGGTTATTACGAAGAATACCCTTCAAAAAGGAATTCA    773

BSNT_00798___    777 AACAGCATTGGAAATGACGGATCGAAAAATCGTTTCATTGGGGGAATAA    825
                     ||||||..|.||||||||..|||||||||||||||||||||||||||||
RBAM_005010__    774 AACAGCGCTTGAAATGACAAATCGAAAAATCGTTTCATTGGGGGAATAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00798 and RBAM_005010

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
