Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00796 and RBAM_004990

See Amino acid alignment / Visit BSNT_00796 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence dna-align/BSNT_00796___ydcD.1.9828.seq
#    -bsequence dna-align/RBAM_004990___ydcD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00796___ydcD-RBAM_004990___ydcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00796___ydcD-RBAM_004990___ydcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00796___ydcD
# 2: RBAM_004990___ydcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 282
# Identity:     268/282 (95.0%)
# Similarity:   268/282 (95.0%)
# Gaps:           0/282 ( 0.0%)
# Score: 1284.0
# 
#
#=======================================

BSNT_00796___      1 TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCCGAAAA     50
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_004990__      1 TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCTGAAAA     50

BSNT_00796___     51 CCTAGTAGCTGAATTGGATGGTGTAGCGATGCGGGAGAAACGAAGCAGAA    100
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004990__     51 CTTAGTAGCTGAATTGGATGGTGTAGCGATGCGGGAGAAACGAAGCAGAA    100

BSNT_00796___    101 ACGAACTGATATCACAAGCAGTGAGAGCATATGTCAGCGAACGAACAACT    150
                     ||||||||||||||||||||||||||||.||||||||||||||.||||||
RBAM_004990__    101 ACGAACTGATATCACAAGCAGTGAGAGCGTATGTCAGCGAACGGACAACT    150

BSNT_00796___    151 CGTCACAACCGTGATTTGATGAGACGCGGCTATATGGAAATGGCGAAAAT    200
                     ||.||.|||||||||||||||||||||||.||||||||||||||||||||
RBAM_004990__    151 CGCCATAACCGTGATTTGATGAGACGCGGGTATATGGAAATGGCGAAAAT    200

BSNT_00796___    201 CAACCTGAATATTTCTTCTGAGGCTCACTTTGCGGAGTGCGAGGCTGAAA    250
                     ||||.|||||||.||||||||||||||||.|||.||||||||.||.||||
RBAM_004990__    201 CAACTTGAATATCTCTTCTGAGGCTCACTATGCTGAGTGCGAAGCAGAAA    250

BSNT_00796___    251 CGACAGTTGAGCGCTTAGTCAGCGGAGGATAA    282
                     ||||.|||||||||||||||||||||||||||
RBAM_004990__    251 CGACCGTTGAGCGCTTAGTCAGCGGAGGATAA    282


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