Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00793 and RBAM_004970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_00793___ydcC.1.9828.seq
# -bsequence dna-align/RBAM_004970___ydcC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00793___ydcC-RBAM_004970___ydcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00793___ydcC-RBAM_004970___ydcC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00793___ydcC
# 2: RBAM_004970___ydcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1130
# Identity: 832/1130 (73.6%)
# Similarity: 832/1130 (73.6%)
# Gaps: 130/1130 (11.5%)
# Score: 3442.0
#
#
#=======================================
BSNT_00793___ 1 TTGAGGCTTTTATGGTACGCATCTGTTCTGCCTAAACGTGTACCGAGCGT 50
RBAM_004970__ 0 -------------------------------------------------- 0
BSNT_00793___ 51 ACCGTTAAAGTCAAACAAGCGATTTCTTCCTTTTACATCAATTGAGAAAA 100
RBAM_004970__ 0 -------------------------------------------------- 0
BSNT_00793___ 101 AGGGGTTGAAAAAGGTGAGAAAAAGCTTTGTTTTGCTTTTAACGGGACTG 150
||||||||||||||||||||||||||||||||||||
RBAM_004970__ 1 --------------GTGAGAAAAAGCTTTGTTTTGCTTTTAACGGGACTG 36
BSNT_00793___ 151 CTTGCTGTTCTTATTCTTTCTGCCTGCGGGCAAAAAACACAGCAAGATAT 200
|||||.||.|||||||||||.||||||||.||||||.|||||.|||||||
RBAM_004970__ 37 CTTGCCGTCCTTATTCTTTCGGCCTGCGGCCAAAAATCACAGGAAGATAT 86
BSNT_00793___ 201 TGTGGCCGGGTTAGATGAAAAGGCGAAAGAATACACCTCGTACAAAGCAA 250
.|||..|||.|||||..|.|||||||||||||||||||||||||||||.|
RBAM_004970__ 87 CGTGAACGGTTTAGACAAGAAGGCGAAAGAATACACCTCGTACAAAGCGA 136
BSNT_00793___ 251 AAGCGAAAATGACCATCGAGACAGGGAGTGAGCCTCAAGTATACAATGTG 300
||||.|||||||||||.||.||.||||||||.||.|||||||||||||||
RBAM_004970__ 137 AAGCCAAAATGACCATTGAAACGGGGAGTGATCCGCAAGTATACAATGTG 186
BSNT_00793___ 301 GAAATCTGGCACAAAAAGCCGTCTCTGTACAGGGTTTATTTAGAAAATCC 350
|||||||||||.||||||||.||.||||||.||||.|||.|.||||||||
RBAM_004970__ 187 GAAATCTGGCATAAAAAGCCTTCCCTGTACCGGGTCTATCTGGAAAATCC 236
BSNT_00793___ 351 GAAAAAGGACCAAAACCAAGTCATTTTACGAAATGAAAACGGAGTATTCG 400
||||||.|||||||||||||||||||||||.||.|..|||||.||.||.|
RBAM_004970__ 237 GAAAAAAGACCAAAACCAAGTCATTTTACGGAACGCCAACGGGGTCTTTG 286
BSNT_00793___ 401 TTCTCACGCCGTCTTTAAATAAGAGCTTCAGATTTCAAAGCGATTGGCCG 450
|.||||||||||||.||||||||||||||||||||||||||||.||||||
RBAM_004970__ 287 TCCTCACGCCGTCTCTAAATAAGAGCTTCAGATTTCAAAGCGACTGGCCG 336
BSNT_00793___ 451 AACAACAGCAGCCAGGTTTATCTGTTTGAATCGCTCGTAAAGGATGTTCA 500
||.|||||||||||.||.|||.|||||||.||.||.||||||||.||.||
RBAM_004970__ 337 AATAACAGCAGCCAAGTATATTTGTTTGAGTCACTTGTAAAGGACGTGCA 386
BSNT_00793___ 501 -------AAACGATTCGGATGCAGTTTTCACAGCGAAAGAAAAGAAATAC 543
||| ||.||.||.|...|.||.|||||.||.||.|||
RBAM_004970__ 387 GCATGACAAA-------GACGCCGTCTATTCCGCCAAAGATAAAAAGTAC 429
BSNT_00793___ 544 GTATTCGAAACAAAAACAAACTATCAGCATAACAAAATGCTGCCCACGCA 593
...||.|||||||||||||||||||||||.||||||||||||||.||.||
RBAM_004970__ 430 ACGTTTGAAACAAAAACAAACTATCAGCACAACAAAATGCTGCCGACTCA 479
BSNT_00793___ 594 AGAAATCACATTTAACAAAAAAGATATGAGCCCGTCATCT-GTCAAAGTG 642
.||||||||.||.||||||||.||.||||||||||| .|| ||||||||.
RBAM_004970__ 480 GGAAATCACTTTCAACAAAAAGGACATGAGCCCGTC-GCTCGTCAAAGTC 528
BSNT_00793___ 643 ATGGATACTGACCGCAAAGTGATGGTCAAAGTAGAATTCAGCAGCTTTGA 692
||||||||.|||||.|||||||||||.|||||.|||||||..||||||||
RBAM_004970__ 529 ATGGATACAGACCGGAAAGTGATGGTAAAAGTCGAATTCAAAAGCTTTGA 578
BSNT_00793___ 693 ATTTAATAAACAATTTGATAAAGAATCATTTGATGAAAAGAAAAATATGA 742
|||.||.||.|..|||||||||||.||.|||||.||.|||||||||||||
RBAM_004970__ 579 ATTCAACAAGCCGTTTGATAAAGACTCTTTTGACGAGAAGAAAAATATGA 628
BSNT_00793___ 743 CCCTTTCTCAAATGGATGTCGCCACAAGCGCGAAGCCTTCCGATACATTT 792
|.|||||.||.|||||.||||||||||||||.|||||.||.|||.|||||
RBAM_004970__ 629 CGCTTTCCCAGATGGACGTCGCCACAAGCGCCAAGCCGTCTGATTCATTT 678
BSNT_00793___ 793 GCGGTCAAAACGCCGCTGGAACTGCCGCTTGGCGTCAAGCTGCTTGAAGA 842
|||||||||||.|||||..||.|||||...||||||||...|||||||||
RBAM_004970__ 679 GCGGTCAAAACCCCGCTTCAAGTGCCGGCCGGCGTCAAAAAGCTTGAAGA 728
BSNT_00793___ 843 AAAAGATATATCTACTGAAGACGGGAAGCGCATCATCATGACGTACGGAG 892
.||||||||.||.||.|..|||||.||.||.|||.|||||||.|||||.|
RBAM_004970__ 729 GAAAGATATTTCAACGGCGGACGGCAAACGGATCGTCATGACTTACGGCG 778
BSNT_00793___ 893 GAGAAAAATCATTTACGTTAATTCAGGAAAAAGCCCAGATTGCCAAGGCT 942
|||||||||||||.||..|.|||||.|||||||||||.||.||.||.||.
RBAM_004970__ 779 GAGAAAAATCATTCACCCTTATTCAAGAAAAAGCCCATATCGCAAAAGCC 828
BSNT_00793___ 943 TCCTCCTCCGTTACGCTGAACGGCGAACCGGTAAATCTCGGCTACACCAT 992
.||||..||||.||||||||.|||||||||||.||||||||||.|||..|
RBAM_004970__ 829 GCCTCTGCCGTCACGCTGAAAGGCGAACCGGTTAATCTCGGCTTCACGGT 878
BSNT_00793___ 993 CGGCGCCCTGTCGGATGCATCATTATCATGGACATATGACGGCGTAGATT 1042
.|..||..|.||.|||.|.||.|||.|.||||||||||||||.||.||||
RBAM_004970__ 879 TGCGGCATTATCTGATACGTCTTTAACGTGGACATATGACGGAGTGGATT 928
BSNT_00793___ 1043 ACCTTCTCTCTTCTAAAGATCTTTCTAAAGAGGAAATGGTGACAGTAGCG 1092
|.|||||.||.||..|.|||||..|.|||||.|||||||||.|.|..||.
RBAM_004970__ 929 ATCTTCTGTCATCACAGGATCTGACAAAAGATGAAATGGTGGCCGCCGCC 978
BSNT_00793___ 1093 AAAAGCATGCAGGGACAATCATCGAAATAA 1122
|||||||||||||||||.||.||.||||||
RBAM_004970__ 979 AAAAGCATGCAGGGACAGTCGTCAAAATAA 1008
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