Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00792 and RBAM_004960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_00792___acpS.1.9828.seq
# -bsequence dna-align/RBAM_004960___acpS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00792___acpS-RBAM_004960___acpS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00792___acpS-RBAM_004960___acpS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00792___acpS
# 2: RBAM_004960___acpS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity: 268/410 (65.4%)
# Similarity: 268/410 (65.4%)
# Gaps: 88/410 (21.5%)
# Score: 861.5
#
#
#=======================================
BSNT_00792___ 1 ATGATTTACGGCATTGGGCTGGACATTACCGAGCTTAAAC-GCA------ 43
|||||||.|||.||.||..|.||||| || ||.||| |||
RBAM_004960__ 1 ATGATTTTCGGAATCGGAATCGACAT---CG---TTGAACTGCACAGAAT 44
BSNT_00792___ 44 -----------TC-GCCTCTATGGCTGGGCGCCAGAAAAGGTTTGCCG-A 80
|| ||| ||| .|||| |||||| ||| |
RBAM_004960__ 45 TGAAAACATGCTCAGCC-----GGC-AGGCG-------AGGTTT-CCGCA 80
BSNT_00792___ 81 GCGGATTTTGACGCGAAGCGAGCTTGACCAATAC-----TATGA----GC 121
..|.||.|||||| ||||| || ||||| |.|.| ||
RBAM_004960__ 81 AAGAATATTGACG-GAAGC-----TG---AATACGCCCGTTTTACATTGC 121
BSNT_00792___ 122 TTTCAGAGAAAAGAAAAATCGAATTTCTCGCGGGCAGATTCGCGGCAAAA 171
|.||.||.|||||.|||||.||||||||||||||.|||||.|||||||||
RBAM_004960__ 122 TGTCGGACAAAAGGAAAATTGAATTTCTCGCGGGAAGATTTGCGGCAAAA 171
BSNT_00792___ 172 GAAGCTTTCTCGAAAGCGTTTGGCACCGGCATTGGGAGGCAGCTCAGCTT 221
|||||.||.||||||||.|..|||||.||.||.||.|...||||||||||
RBAM_004960__ 172 GAAGCCTTTTCGAAAGCATACGGCACAGGTATCGGCAAAGAGCTCAGCTT 221
BSNT_00792___ 222 TCAGGACATTGAAATTAGGAAA-GACCAAAATAGC----AAGCCCTATAT 266
||||||.||||||| ..||||| ||| |.||| |||||
RBAM_004960__ 222 TCAGGATATTGAAA-CCGGAAACGAC----AAAGCGGGAAAGCC------ 260
BSNT_00792___ 267 CATTTGCACGAAACTGAGCCAGGC---------CG-CCGTTCACGTATCG 306
|.|||..| .|||.||||.|| || |.||||||||.||.
RBAM_004960__ 261 --TGTGCTGG--CCTGCGCCAAGCTTGACTGCGCGACGGTTCACGTCTCC 306
BSNT_00792___ 307 ATCACTCATACAAAAGAATACGCTGCCGCGCAGGTTGTGATTGAAAGGTT 356
||.||.||.||||||||||||||.||.||.|||||.||||||||||||||
RBAM_004960__ 307 ATTACCCACACAAAAGAATACGCCGCGGCACAGGTCGTGATTGAAAGGTT 356
BSNT_00792___ 357 GTCAAGCTAG 366
||||.|||||
RBAM_004960__ 357 GTCACGCTAG 366
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