Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00789 and RBAM_004940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_00789___ydbT.1.9828.seq
# -bsequence dna-align/RBAM_004940___ydbT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00789___ydbT-RBAM_004940___ydbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00789___ydbT-RBAM_004940___ydbT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00789___ydbT
# 2: RBAM_004940___ydbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1561
# Identity: 1060/1561 (67.9%)
# Similarity: 1060/1561 (67.9%)
# Gaps: 176/1561 (11.3%)
# Score: 3524.0
#
#
#=======================================
BSNT_00789___ 1 ---ATGTCTGAACCGAAACGCCTGCACCCGGCGGCAGTCATTTTGAATTT 47
||||||||.||||||||.||||||||||||||.||.||||||||.||
RBAM_004940__ 1 ATGATGTCTGAGCCGAAACGTCTGCACCCGGCGGCCGTGATTTTGAACTT 50
BSNT_00789___ 48 ATGCCATACCATTATTCAAACGATAAAAAATATCATTCTGCCATTCTTTT 97
||.|||||..|||||..||||.||.|||||.||.|||||||||||.|||.
RBAM_004940__ 51 ATTCCATATTATTATCGAAACCATTAAAAACATTATTCTGCCATTTTTTC 100
BSNT_00789___ 98 TTGTGTATATTGTCAATTCAAACCATACTGTCCGTTTTTACGGAGCCATT 147
|.||.||||||||.|||||.|||||...|.||||.||||||||||.||||
RBAM_004940__ 101 TCGTCTATATTGTTAATTCCAACCACTTTATCCGCTTTTACGGAGGCATT 150
BSNT_00789___ 148 GCGCTCGGTGTGCTGTTCATCTGGCTTGTAGCGGCAAGCATTATCAAATG 197
|||||||..||.|||.|.||||||||..|..||||.||..|.|||.|.||
RBAM_004940__ 151 GCGCTCGCCGTCCTGCTTATCTGGCTGATTACGGCTAGTGTGATCGAGTG 200
BSNT_00789___ 198 GAGAAGGTTTACCTATCGAATTGAAGATGATGAATTTAGAATTGAAGAAG 247
|||||..|||||.||.||.|||||.||.|..|||||.|||||||||||||
RBAM_004940__ 201 GAGAAAATTTACATACCGGATTGAGGACGGAGAATTCAGAATTGAAGAAG 250
BSNT_00789___ 248 GCTTATTTGTTACGAAAAAGCGATACATATCGATTGATCGGATTCAAACA 297
||||.|||.|||||||||||.|||||||.||.|||||.|||||||||.||
RBAM_004940__ 251 GCTTGTTTTTTACGAAAAAGAGATACATCTCCATTGACCGGATTCAATCA 300
BSNT_00789___ 298 ATGAATACGAGCGCGGGCCTTGTCCAGCAAATCTTTAAGCTTGTGAAGCT 347
|||||||||||.||.|||.|..|.|||||..|.|||||||||||.|||||
RBAM_004940__ 301 ATGAATACGAGTGCCGGCATCATTCAGCAGCTTTTTAAGCTTGTTAAGCT 350
BSNT_00789___ 348 GCAAATTGAAACAGCAGGCGGAGGCAAGGAGGCAGAAGCCGTTCTT-TCT 396
.|||||.|||||.||.||||..||.||..|.||.||.|||| |||| ||.
RBAM_004940__ 351 TCAAATCGAAACGGCCGGCGACGGGAAAAATGCCGAGGCCG-TCTTATCC 399
BSNT_00789___ 397 GCTATTTCTGTTGAAGAAGCGGAACGCATCAAAGAAGCTGTCTTTAAGAA 446
||.|||.||.|.|||||.||||||||.||||.||...||||.|||.||.|
RBAM_004940__ 400 GCCATTACTTTGGAAGAGGCGGAACGGATCAGAGCGACTGTTTTTCAGCA 449
BSNT_00789___ 447 AAAAGCGCAAAGACGAGAAAATGAACTTGATGAAGAACGGCTTGAACCTG 496
||||||| |||.|| ||||||||
RBAM_004940__ 450 AAAAGCG-------GAGCAA-----------GAAGAACG----------- 470
BSNT_00789___ 497 AAGAGGAGTTGGTTCCGGCCGTTGAGGTGCAAGAGCACTATCGCATGAAC 546
||.||| |.|||..|.||.|||.|||| || |||..|
RBAM_004940__ 471 -AGGGGA---------GACCGCAGCGGAGCAGGAGC-----CG-ATGTGC 504
BSNT_00789___ 547 GCGAAAG------AAT---------------------------TGCTCTT 563
|.|.||| ||| ||||..|
RBAM_004940__ 505 GGGGAAGATGTGCAATCCGTTTACCGACTGTCTGTAGGTGAGCTGCTTAT 554
BSNT_00789___ 564 GGCCGCTTCTACCTCCGGCGGAATCGGAGTCATTATCTCCGCTGTATTTG 613
||||||.||.||.|||||.||||||||.|||||.|||||.||.|||||.|
RBAM_004940__ 555 GGCCGCCTCAACATCCGGGGGAATCGGTGTCATCATCTCAGCGGTATTCG 604
BSNT_00789___ 614 CACTTATTTCCCAGCTTGATGAAGTGCTGCCAATGGATTGGTTATTTGAT 663
|.||..||||.|||.||||||||||.||.||.|||||.|||.|.|.|||.
RBAM_004940__ 605 CCCTCTTTTCTCAGATTGATGAAGTACTTCCGATGGACTGGCTCTATGAC 654
BSNT_00789___ 664 AAATTTTCCTTCCTTCAGCACGCCAGTATTGGTATTTACGCGGTACTCGT 713
|..|||||.||.||..||||.||.||.||.||.||.|||||.||..||.|
RBAM_004940__ 655 AGGTTTTCTTTTCTCAAGCATGCGAGCATCGGCATATACGCCGTGATCAT 704
BSNT_00789___ 714 TTTTATCGGTTTATTTATCGCCTGGATTTTCAGCATCGCGGGCATGATGT 763
|||.||.||.||.||.|||||||||.|.||.||.|||||.||.||||||.
RBAM_004940__ 705 TTTCATAGGATTGTTCATCGCCTGGCTGTTAAGTATCGCCGGTATGATGA 754
BSNT_00789___ 764 TTAGATACGCGAACTTTCAAATCATAAAAAAA-GAGCAGGAACTGGTGAT 812
|.|...|.||.||||||.|.|| |.||||||| ||.||.|||.||||.||
RBAM_004940__ 755 TCAAGCATGCCAACTTTAAGAT-AGAAAAAAAGGAACACGAATTGGTCAT 803
BSNT_00789___ 813 TTCAAGGGGAATTATTGAAAAACATCAAGTCACGATTCCGTTGCGAAAAA 862
|.|.||.|||||||||||||||||||||||.||.||.|||.|.||.||||
RBAM_004940__ 804 TACCAGAGGAATTATTGAAAAACATCAAGTGACAATCCCGCTCCGTAAAA 853
BSNT_00789___ 863 TACAAGCCATTAAAATCAAAGAAAATATCATTCGCCAGCTTTTCGGATTT 912
|.||||||||||||||.|||||||||.|.||..|.||..|.|||||||..
RBAM_004940__ 854 TCCAAGCCATTAAAATGAAAGAAAATGTGATCAGGCAATTATTCGGATAC 903
BSNT_00789___ 913 GTAACGGTGTCTATCGTCAGCGCAGG-AG-GCGGCGACCGGGAAAAAG-A 959
|..|||||..|.||.||||||||.|| || ||| |||||..|| |
RBAM_004940__ 904 GCGACGGTTGCGATTGTCAGCGCCGGCAGTGCG------GGGAATGAGAA 947
BSNT_00789___ 960 AGAAGGCGCTTTGACCATTCTCTTTCCAATGATTCATAAAAAAAAGCTTC 1009
||||||.||...|||.|||||.|||||.||.||.|..|||..||||||
RBAM_004940__ 948 AGAAGGAGCACAGACGATTCTGTTTCCGATCATCCGCAAATCAAAGCT-- 995
BSNT_00789___ 1010 CGTA--CATGCTCCGAAC--ATTTACGCCGGAATATACGCTGGAAGAAAA 1055
||.| .||||| |||| .||.||.|||||.||...||||||||||||
RBAM_004940__ 996 CGGAGTGATGCT--GAACGGTTTCACACCGGATTACGTGCTGGAAGAAAA 1043
BSNT_00789___ 1056 C----------TGCCG--ACGCCTGCCGCGGCGCGCGTTGAAACGCTATT 1093
| ||||| |.| |.|||.|||| ||.||||
RBAM_004940__ 1044 CCGGAATCATTTGCCGAAAAG---GGCGCTGCGC---------CGGTATT 1081
BSNT_00789___ 1094 TGTTCCGTTCTGTCATTTTTTCACTC--TTTT--TGATCATTCCGTTATG 1139
|.|||||.||..|.||.|| ||| |||| |||||||.|||.|.||
RBAM_004940__ 1082 TATTCCGATCCATAATCTT----CTCGGTTTTCGTGATCATCCCGCTTTG 1127
BSNT_00789___ 1140 TATCTTCTTTCAGCCATGGGGCTATCTGTCAGTCATCCTGCTGCCGATAG 1189
|||..|.|||.|.||.|||||.|||...||..||.|..||||.||..|.|
RBAM_004940__ 1128 TATTCTGTTTAAACCGTGGGGATATGCATCGCTCCTTGTGCTTCCCGTCG 1177
BSNT_00789___ 1190 AGTTGCT-CTTCGGCTATCTCGCGTATAAAGA-GGCTGCATGGACGATCA 1237
|..||.| ||| ||.|||..|.||| |.|.|| .||..|||||...||.|
RBAM_004940__ 1178 AACTGGTGCTT-GGATATGCCTCGT-TTAGGACAGCGTCATGGTGCATAA 1225
BSNT_00789___ 1238 ACGGGGACCGTCTTCAGCTGACGTCTAGATTTATAGGCAGAACAACCGCC 1287
||||.|.|.|.||||||.|.||..|.||..|..|.||.|..||.|||.|.
RBAM_004940__ 1226 ACGGCGGCAGGCTTCAGATCACCACGAGGCTGGTCGGAAAGACGACCACG 1275
BSNT_00789___ 1288 ATTGTACTGAAAAAACGAATGCAG--GTCTGCAAGTTCAGCCAATCCTAT 1335
|||.|.||||.||.|.|||||||| ||.|| ||| ||||||..||||.|
RBAM_004940__ 1276 ATTATGCTGAGAAGAAGAATGCAGATGTTTG-AAG-TCAGCCGCTCCTTT 1323
BSNT_00789___ 1336 TTCCAAAAGA-AAGGCCGCTTGTATACCATTT----CTACTTCAGTGAAA 1380
.|.|||||.| |||||.|||.| |||.| ||||..||||||||
RBAM_004940__ 1324 CTGCAAAAAAGAAGGCGGCTCG-----CATCTGTGGCTACCGCAGTGAAA 1368
BSNT_00789___ 1381 TCATCGAGCCATATGGAAGAAT-TAACGGTGAGGGATGTAGGTGAAGAGG 1429
|||.|...|||.|||| ||.|| |.|.|.|||.||||||..|.||.||.|
RBAM_004940__ 1369 TCAGCTCACCACATGG-AGCATGTCATGCTGAAGGATGTCAGCGAGGAAG 1417
BSNT_00789___ 1430 ATGCAGCCTTCATTTTAAA-----------CTGGTACTCATATGAAAAAG 1468
||||.| || ||||||.|||||||||||||
RBAM_004940__ 1418 ATGCCG-----------AACGCATCGGGCGCTGGTATTCATATGAAAAAG 1456
BSNT_00789___ 1469 CGGACGGTTAA 1479
|||||||||||
RBAM_004940__ 1457 CGGACGGTTAA 1467
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