Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00788 and RBAM_004930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_00788___ydbS.1.9828.seq
# -bsequence dna-align/RBAM_004930___ydbS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00788___ydbS-RBAM_004930___ydbS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00788___ydbS-RBAM_004930___ydbS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00788___ydbS
# 2: RBAM_004930___ydbS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 493
# Identity: 371/493 (75.3%)
# Similarity: 371/493 (75.3%)
# Gaps: 23/493 ( 4.7%)
# Score: 1373.0
#
#
#=======================================
BSNT_00788___ 1 ---TTGAGAGAGCAGCCAAAAAACCAAATCAGTCCAGACGGATTAAAGGT 47
|||||||..|||||||||||.|.||||||||||..|||.|||||.||
RBAM_004930__ 1 ATGTTGAGAGCACAGCCAAAAAATCGAATCAGTCCAAGCGGCTTAAAAGT 50
BSNT_00788___ 48 TTGGCGACTTCAAGAGATCATCATATCCG----CTGTTTGCTTGCTTATT 93
.|||||.|||||.||.||||||.|.|||| ||||.|.||.|| .
RBAM_004930__ 51 CTGGCGTCTTCAGGAAATCATCCTGTCCGCCTTCTGTCTTCTGGC----C 96
BSNT_00788___ 94 GTCATTGCAGTTGCAGTGTTAAGCTATTATTTTCATTGGCCGTACTGGAT 143
||.||.||||..||.||.||||||.|||..||.|||||||||||.|||||
RBAM_004930__ 97 GTTATAGCAGCAGCTGTTTTAAGCCATTTCTTCCATTGGCCGTATTGGAT 146
BSNT_00788___ 144 CAGCGGCGTGCTCGGC-GCAGTTTGGCTGCTGGGATCGATTGTGA---CG 189
||.|||.||.|||||| .|| |||||.|..|.||.|| .|||| |.
RBAM_004930__ 147 CACCGGAGTCCTCGGCATCA-TTTGGATATTCGGTTC---AGTGATATCC 192
BSNT_00788___ 190 GTCTTTATCATTCCGAAGGTCCGTCATAAGGTGTGGCGATATGAAGTCCA 239
||||.|..|||.|||||..||.|.||.|.|.|.|||||.|||||||||||
RBAM_004930__ 193 GTCTATGCCATACCGAAAATCAGGCACAGGATCTGGCGCTATGAAGTCCA 242
BSNT_00788___ 240 TGAACATGAAATAGATATTCAGTCAGGTATTTTTGTGGTGACACGTGTGA 289
||||.|||||||.||||||||.||.||.||||||.|.||.|.|||.||.|
RBAM_004930__ 243 TGAAAATGAAATTGATATTCAATCCGGCATTTTTATTGTCAAACGGGTCA 292
BSNT_00788___ 290 TTGTTCCGATGGTCAGAGTTCAGCACGTCGATACGTCACAAGGGCCATTA 339
||||.||||||||.||.||.||||||||.|||||.||||||||.||..|.
RBAM_004930__ 293 TTGTGCCGATGGTGAGGGTGCAGCACGTAGATACTTCACAAGGCCCGCTC 342
BSNT_00788___ 340 TTAAAAAAATACAACCTGGCAACGGTGAAAATTTCCACGGCCGCGACCGT 389
.|.|.||..|||...|||||..|.||.|||||.||||||||.||.|||||
RBAM_004930__ 343 CTCAGAAGGTACCGTCTGGCCTCAGTCAAAATCTCCACGGCGGCAACCGT 392
BSNT_00788___ 390 TCATTCGATCCC--CGCTTTAGAGATGGAGGAAGCGGATCGGCTGAGAGA 437
||||||.||.|| ||||| ||.|||||||||||.||.||||||||.||
RBAM_004930__ 393 TCATTCCATTCCGGCGCTT--GATATGGAGGAAGCTGACCGGCTGAGGGA 440
BSNT_00788___ 438 CTCCATTTCCCGTCTGGCGAGGGTGACTGACGATGATGTCTGA 480
.|||||||||||||||||.||||||||.||.||||||||||||
RBAM_004930__ 441 TTCCATTTCCCGTCTGGCAAGGGTGACGGAAGATGATGTCTGA 483
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