Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00781 and RBAM_004890

See Amino acid alignment / Visit BSNT_00781 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_00781___ydbP.1.9828.seq
#    -bsequence dna-align/RBAM_004890___ydbP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00781___ydbP-RBAM_004890___ydbP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00781___ydbP-RBAM_004890___ydbP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00781___ydbP
# 2: RBAM_004890___ydbP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     264/321 (82.2%)
# Similarity:   264/321 (82.2%)
# Gaps:           3/321 ( 0.9%)
# Score: 1093.0
# 
#
#=======================================

BSNT_00781___      1 ATGAAAAAAATCACAACAAACGAACAATTTAATGAACTGATTCAATCTGA     50
                     |||||||||||||..||||..|||||||||||||||||.||||||||.||
RBAM_004890__      1 ATGAAAAAAATCAGTACAACAGAACAATTTAATGAACTTATTCAATCCGA     50

BSNT_00781___     51 TAAAGAAATCATTGTAAAGTTTTATGCTGATTGGTGCCCAGACTGCACAC    100
                     .||.||||||||.||.||.||||..|||||.||||||||.||||||||.|
RBAM_004890__     51 CAAGGAAATCATCGTGAAATTTTTCGCTGACTGGTGCCCTGACTGCACGC    100

BSNT_00781___    101 GCATGAATATGTTCATCGGCGATATTTTGGAAGAGTACAACCAAAACGAT    150
                     ||||||||||||||||||||||||||||||||||.||.||.|||||.|||
RBAM_004890__    101 GCATGAATATGTTCATCGGCGATATTTTGGAAGAATATAATCAAAATGAT    150

BSNT_00781___    151 TGGTATGAGCTGAATAAGGACGAGCTTCCTGACCTGGCTGAAAAATACCA    200
                     ||||||||.|||||.|..||||||||.|||||.||.||.||.|||||.||
RBAM_004890__    151 TGGTATGAACTGAACAGAGACGAGCTCCCTGAGCTTGCCGACAAATATCA    200

BSNT_00781___    201 AGTAATGGGCATTCCCAGCCTGCTTATTTTCAAGAACGGTGAAAAAACAG    250
                     .|||||||||||.||.|||||.||.||.||.||.|||||.|||||.|.||
RBAM_004890__    201 GGTAATGGGCATACCGAGCCTTCTGATCTTTAAAAACGGCGAAAAGAAAG    250

BSNT_00781___    251 CTCACCTTCACAGCGCCAATGCCAAAACGCCTGAAGAAGTGACTGAATTT    300
                     |.||.|||||||||||.||.||.||||||||.||||||||.||.||.|||
RBAM_004890__    251 CGCATCTTCACAGCGCAAACGCGAAAACGCCCGAAGAAGTCACAGAGTTT    300

BSNT_00781___    301 TTATCTGAACATATAAGCTAA    321
                     |||||..|.|||||   .|||
RBAM_004890__    301 TTATCACAGCATAT---TTAA    318


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