Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00777 and RBAM_004850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_00777___ydbM.1.9828.seq
# -bsequence dna-align/RBAM_004850___ydbM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00777___ydbM-RBAM_004850___ydbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00777___ydbM-RBAM_004850___ydbM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00777___ydbM
# 2: RBAM_004850___ydbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1167
# Identity: 836/1167 (71.6%)
# Similarity: 836/1167 (71.6%)
# Gaps: 81/1167 ( 6.9%)
# Score: 2997.5
#
#
#=======================================
BSNT_00777___ 1 ATGTCATTATTTATACAAAACGATCAACAGCGGCAATGGATGGAGAAAAT 50
|||||.|||||
RBAM_004850__ 1 ---------------------------------------ATGGAAAAAAT 11
BSNT_00777___ 51 CGGACGGATTGCGGATGAATTTCAGCAAACTGCTGC---TGAAGATGACG 97
|||.|.|.||||.||.||||||||..||||.||.|| |||.|||||.|
RBAM_004850__ 12 CGGCCTGCTTGCAGACGAATTTCAAAAAACAGCCGCGCTTGATGATGAGG 61
BSNT_00777___ 98 AACAGGGACGTTTTCCTGCAGAGAAAATACAAAAACTGCGTGATGCTGGG 147
.|||.|||||||||||.||||||||.||||.||||||.||.||.||.
RBAM_004850__ 62 ---CGGGCCGTTTTCCTGCGGAGAAAATTCAAAGACTGCGCGACGCGGGA 108
BSNT_00777___ 148 TATACAGCATTAACATTGCC---GGCATCTCATGGCGGAGGGGGCATTTC 194
|||||.||.|||||..|.|| ||.|| || |||||.|..||||||||
RBAM_004850__ 109 TATACGGCGTTAACGGTACCTGAGGTAT-TC--GGCGGTGCAGGCATTTC 155
BSNT_00777___ 195 TGTTTACGATATGCTCCTGTTTCAAGAGCGGCTTGCACGGGGAGATGCTC 244
.|||||.||||||.|.||||||||.||.|||||.||.|||||||| |.|
RBAM_004850__ 156 CGTTTATGATATGGTGCTGTTTCAGGAACGGCTGGCGCGGGGAGA--CGC 203
BSNT_00777___ 245 CGACG--GCTCTTAGCATCGGCTGGCATTTGAGCGTGATCGGGGAGCTTG 292
.|.|| |||||..|.||||||||||||||...|||.||.||.|||||.|
RBAM_004850__ 204 GGCCGTTGCTCTCGGAATCGGCTGGCATTTATCCGTCATGGGTGAGCTCG 253
BSNT_00777___ 293 GAGAAGGCAACAGCTGGGATGAAGACGTATTTGCATTTGTTGCCAAGGAA 342
|||||||.|||||||||||||||||.||.|||.|||||.|..|..|.||.
RBAM_004850__ 254 GAGAAGGAAACAGCTGGGATGAAGATGTCTTTTCATTTATCACAGAAGAG 303
BSNT_00777___ 343 GTCCAAAACGGAGCCGTCATTAACAGGGCGGCGACTGAAGCGAAAACCGG 392
||..||||.|||||.|||.|.||||||||.|||||.|||..|.|.|||||
RBAM_004850__ 304 GTGAAAAAGGGAGCTGTCCTGAACAGGGCAGCGACGGAACGGCAGACCGG 353
BSNT_00777___ 393 AAGCCCGACAAGAGGAGGGCGTCCCGGTACACACGCCGTCAAAAAGGATG 442
.||.|||||.||.|||||..|.|||||.||...|||.||||||||.||.|
RBAM_004850__ 354 CAGTCCGACGAGGGGAGGAAGACCCGGCACCTCCGCTGTCAAAAAAGACG 403
BSNT_00777___ 443 GCAAATGGGCAGTGAACGGGAGAAAAACCTTTACGACGATGTCACAGGCT 492
|.|||||||...|||||||..|||||||||||||.||..|.||||.|.||
RBAM_004850__ 404 GAAAATGGGTGCTGAACGGCCGAAAAACCTTTACAACCCTTTCACTGACT 453
BSNT_00777___ 493 CTGGATTATTTTTTAGTAACCGCATGGATTGAGGACAAACAAACAACAGG 542
.||||||||.|..|.||.||.|||||||||||.||.||||||||.||.||
RBAM_004850__ 454 TTGGATTATATGCTTGTGACGGCATGGATTGAAGAAAAACAAACGACCGG 503
BSNT_00777___ 543 CGTGTTTCTCATTCATAAAGATGATCCCGGCTTGTCGATTGAAGAAACGT 592
.||.||||||||||||||||||.|..|.|||.|.||..|.||||||||.|
RBAM_004850__ 504 TGTTTTTCTCATTCATAAAGATCAGTCAGGCGTTTCAGTCGAAGAAACAT 553
BSNT_00777___ 593 GGGATATGATGGCGATGCGGGCGTCTGGGAGCCATGA---CCTTGTACTG 639
||||||||||.||.|||..||||.|.||.|||||||| ||||.|| |
RBAM_004850__ 554 GGGATATGATTGCCATGAAGGCGACCGGAAGCCATGATCTCCTTTTA--G 601
BSNT_00777___ 640 AACGAAGTCATGCT---TGATGAGAATAAGCTGGTGGAACTGCT--TCA- 683
|.| |.||||.|.| |||.||| ..|||.||||| ||| |||
RBAM_004850__ 602 ATC-ATGTCACGGTCAGTGACGAG---CGGCTTGTGGA---GCTTATCAG 644
BSNT_00777___ 684 AGGGCCTCGCGGAGCTAAGCCGAATGGCTGGCTGCTTCACATTCCGGCGA 733
.|||||..|.|..||.||...||||||||||||||||||||||||.||..
RBAM_004850__ 645 CGGGCCGAGAGCGGCGAAAGTGAATGGCTGGCTGCTTCACATTCCCGCTG 694
BSNT_00777___ 734 TTTATCTTGGTGTGGCTCAAGCTGCTCGTGACTATGCAGTGCAATTTGCA 783
.||||||.||..|.||||||||.||..|.||||||||.||.|..||||||
RBAM_004850__ 695 CTTATCTGGGCATCGCTCAAGCGGCAAGGGACTATGCCGTCCGGTTTGCA 744
BSNT_00777___ 784 TCTGAGTATTCTCCAAACAGCTTGAATGGACCGATCAAGAATGTCCCGGC 833
||.||.|||||.||.||||||.||||.||||||||.||..|.||.|||||
RBAM_004850__ 745 TCCGAATATTCGCCGAACAGCCTGAACGGACCGATTAAAGACGTGCCGGC 794
BSNT_00777___ 834 CGTACAGCAAAGAACAGGCGAAATGGAGCTTGAACTGCTCAATGCCAGAC 883
|||.|||||..|.|..||.|||||||||||||||.||.|.||.||.||||
RBAM_004850__ 795 CGTTCAGCAGCGTATCGGGGAAATGGAGCTTGAATTGTTAAAAGCGAGAC 844
BSNT_00777___ 884 ACTTTCTTTTC----CATATCGCTCAATTGTATGACGATCCGGAGCGGCG 929
|.|||||.||| | .||.|||.|||||||.||.|||.|.||.||
RBAM_004850__ 845 AGTTTCTCTTCACGGC----GGCGCAAATGTATGATGACCCGAAACGCCG 890
BSNT_00777___ 930 TCCACACTTGACAAGCGAGCTCGGTGCGGCTAAGCATATCGTCACAAACG 979
.||...|.|.|.||||||||||||....||.||.|||||.||.|||||.|
RBAM_004850__ 891 CCCTTTCATCAAAAGCGAGCTCGGCATCGCAAAACATATTGTGACAAATG 940
BSNT_00777___ 980 CTGCGCTGTCTGTTGTTGATAAAGCGATGAGAATTGTCGGGGCCAAAAGC 1029
|.|..||.|||||||||||||||||.||||||||...|||.||.||||||
RBAM_004850__ 941 CCGGCCTTTCTGTTGTTGATAAAGCAATGAGAATCACCGGCGCAAAAAGC 990
BSNT_00777___ 1030 CTGGAACGAACCAACCCGCTTCAGCGCTATTACCGTGATGTGCGCGCCGG 1079
|||||.||||..||.|||||||||||.|||||.||.||||..||.|||||
RBAM_004850__ 991 CTGGAGCGAAATAATCCGCTTCAGCGGTATTATCGGGATGCCCGGGCCGG 1040
BSNT_00777___ 1080 TCTTCACAACCCGCCGATGGATGACGCCGTGATACACAAGCTGGCGGCTG 1129
.||||||||.|||||||||||.||.||.||.||...|||..|.|||||.|
RBAM_004850__ 1041 CCTTCACAATCCGCCGATGGACGATGCGGTCATCGGCAAATTAGCGGCGG 1090
BSNT_00777___ 1130 AAGCGTTTGAGTCATAA 1146
||||.||||||..||||
RBAM_004850__ 1091 AAGCCTTTGAGCAATAA 1107
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