Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00766 and RBAM_004790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_00766___dctR.1.9828.seq
# -bsequence dna-align/RBAM_004790___dctR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00766___dctR-RBAM_004790___dctR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00766___dctR-RBAM_004790___dctR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00766___dctR
# 2: RBAM_004790___dctR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 710
# Identity: 511/710 (72.0%)
# Similarity: 511/710 (72.0%)
# Gaps: 67/710 ( 9.4%)
# Score: 1832.0
#
#
#=======================================
BSNT_00766___ 1 ATGGCTCGTAAAGAATGG-----AAGGTTCTGCTCATTGAAGACGATCCG 45
|||| |||||.|||||.||||||||.||||||
RBAM_004790__ 1 --------------ATGGACATCAAGGTGCTGCTTATTGAAGATGATCCG 36
BSNT_00766___ 46 ATGGTTCAAGAGGTCAATAAGGATTTCATTACAACTGTTAAAGGCGTT-A 94
|||||.||.|||||.|||||.||.||.||.||...|||| ..||.||| |
RBAM_004790__ 37 ATGGTGCAGGAGGTGAATAAAGAATTTATCACCGGTGTT-TCGGGGTTCA 85
BSNT_00766___ 95 CTGTCTGTGCAACGGCAGGAAACGGAGAGGAAGGCATGAAGCTGATTAAA 144
..|||...||.||.||.|...|||||||.||.||.||.|.|||.||||||
RBAM_004790__ 86 GCGTCATCGCCACAGCCGCTGACGGAGACGAGGGAATCAGGCTTATTAAA 135
BSNT_00766___ 145 GAAGAACAGCCGGATCTCGTCATTCTCGATGTGTACATGCCGAAAAAAGA 194
||....|.|||.|..|||||..|..|.||.||.|||||||||||||||||
RBAM_004790__ 136 GATCTGCGGCCCGGGCTCGTGGTATTAGACGTATACATGCCGAAAAAAGA 185
BSNT_00766___ 195 CGGCATCAAGACCTTGCAGGAGATCAGAAAGCAAAAGCTTGAAGTGGATG 244
|||.||.||.||..|.|||||.||||||||.||||||||.||||||||.|
RBAM_004790__ 186 CGGAATTAAAACGCTCCAGGAAATCAGAAAACAAAAGCTCGAAGTGGACG 235
BSNT_00766___ 245 TCATTGTCGTCTCCGCTGCAAAAGACAAGGAAACGATCTCA-CTCATGCT 293
||||..|||||||.||.|||||||||||.|||||.||| || ||.|||||
RBAM_004790__ 236 TCATCATCGTCTCGGCCGCAAAAGACAAAGAAACAATC-CAGCTTATGCT 284
BSNT_00766___ 294 GCAAAACGGAGCGATTGACTATATCTTAAAGCCGTTTAAGCTTGAGCGAA 343
|||||||||.|||...||||||||.||.||||||||||||||.|||||.|
RBAM_004790__ 285 GCAAAACGGTGCGGCCGACTATATTTTGAAGCCGTTTAAGCTGGAGCGGA 334
BSNT_00766___ 344 TGAGACAGGCGCTCGAAAAGTACAAGCAATATAAACAAAAAATCGAAGCG 393
|||||||||||||||||||.||.||.||||||||||..|||||.||||.|
RBAM_004790__ 335 TGAGACAGGCGCTCGAAAACTATAAACAATATAAACGGAAAATTGAAGAG 384
BSNT_00766___ 394 AATGATACGCTGTCCCAGGAACAGCTCG--ATGCGATCCTGAATATTCCG 441
.||||.||..||||.||.||.|||||.| |||| |.||.||.||||||
RBAM_004790__ 385 CATGACACCATGTCGCAAGAGCAGCTTGACATGC--TGCTTAAAATTCCG 432
BSNT_00766___ 442 CAGCAGGCCGT-ACAGGATCTGCCGAAAGGGTTGAATCACTTCACGATGA 490
|| .|..|||| .|.||||||||||||.|||||.|||||.||.|||||||
RBAM_004790__ 433 CA-AAATCCGTCCCGGGATCTGCCGAAGGGGTTAAATCATTTTACGATGA 481
BSNT_00766___ 491 ATGAAGTCACTGCTTT------TTTGAAACAGCAAACCGCATCC-CTTTC 533
|||||.| ||| |.||||||||||.| ||.|.|| |||||
RBAM_004790__ 482 ATGAAAT------TTTGACCTATATGAAACAGCAGA-CGGAGCCGCTTTC 524
BSNT_00766___ 534 TGCTGAAGAGGTCGCCAAGGCTCTCGGCATCGCCAGAGTGACAGCCAGAC 583
.||||||||.|.||||||.||.|||||.|||||.||.|||||.||..|.|
RBAM_004790__ 525 AGCTGAAGAAGCCGCCAAAGCGCTCGGGATCGCAAGGGTGACGGCGCGGC 574
BSNT_00766___ 584 GATATCTTGA-TTACTT-AGAAAAAACCGGGATCATCAAATTGGACGTTC 631
|.|||||||| ||.||| |||||.| |||....||.||..|.|||.|||
RBAM_004790__ 575 GTTATCTTGATTTTCTTGAGAAAGA--CGGCCAGATTAAGCTCGACATTC 622
BSNT_00766___ 632 AATACGGCGGAGTCGGCCGGCCGGTCAACCGCTACGTGTTAAA------- 674
|||||||.|||||.|||||||||||.||||||||| |||
RBAM_004790__ 623 AATACGGGGGAGTGGGCCGGCCGGTTAACCGCTAC-----AAATTCGTCC 667
BSNT_00766___ 675 ---AGGATAA 681
||
RBAM_004790__ 668 GCTAG----- 672
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