Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05011 and RBAM_004700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:34
# Commandline: needle
# -asequence dna-align/BSNT_05011.1.9828.seq
# -bsequence dna-align/RBAM_004700___yvaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05011-RBAM_004700___yvaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05011-RBAM_004700___yvaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05011
# 2: RBAM_004700___yvaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 431
# Identity: 197/431 (45.7%)
# Similarity: 197/431 (45.7%)
# Gaps: 169/431 (39.2%)
# Score: 548.0
#
#
#=======================================
BSNT_05011 1 ATGA-GATA----TATGAAGCTGTTTTTTCTCGTGACTGATATCGGTTTT 45
|||| ||.| || |||.|..|.||.|||.|.||.|||||.||.|||
RBAM_004700__ 1 ATGATGAAAGGGTTA--AAGGTTCTCTTCCTCATTACAGATATTGGATTT 48
BSNT_05011 46 ATCTTGTACTGG-CTGTCAGCCGGGTTTT-CGCTCATACCGGAAAACTGG 93
|||.|.||.||| .|||.| |...|||| .|...||.||..||||...|
RBAM_004700__ 49 ATCGTTTATTGGATTGTTA--CTTTTTTTGAGTGGATTCCAAAAAATATG 96
BSNT_05011 94 GCTTTTAAACATCATGA-----CCATCCGTTTATGATTGCCTGGAACTGG 138
|..||||||.||.|||| ||| |.||.||.||||||||||||
RBAM_004700__ 97 GTGTTTAAAGATTATGATAACGCCA-----TGATCATGGCCTGGAACTGG 141
BSNT_05011 139 TCTTTTTTTCCGCTGGATATCCTGATTTCTGTCACAGGGTTGTACAGCTT 188
||.||.|||||..|.|||||..|.|||||..|.||.|||.||||||||||
RBAM_004700__ 142 TCATTCTTTCCCTTAGATATTTTCATTTCGATAACCGGGCTGTACAGCTT 191
BSNT_05011 189 GTACC----TACAGCGGGTGAATCGTGCTGACTGGAAGCTGATGGCGC-- 232
||..| || |.|| |||.|.||| .|.|||||||
RBAM_004700__ 192 GTTTCTTTATA-AACG---GAAACATGC----------GTTATGGCGCCC 227
BSNT_05011 233 --------TGATTTCTCTTGTGCTGACCTGTTGTTCAGGTCTGCAGGCG- 273
|.||.||.|||||.|||||||.|||||||||.|||||.|||
RBAM_004700__ 228 TTTCGCATTAATATCACTTGTACTGACCTTTTGTTCAGGCCTGCAAGCGA 277
BSNT_05011 274 ---------------CTATC----ATTCTGA------------------- 285
.|||| |||.|||
RBAM_004700__ 278 TTGCCTTTTGGGTATTTATCGGTGATTTTGATCTTATGTGGTGGGCATTC 327
BSNT_05011 285 -------------------------------------------------- 285
RBAM_004700__ 328 AATCTGTACTTGCTTCTTTATCCTTTATATTTTATTCGGAAATTGCTGGT 377
BSNT_05011 285 ------------------------------- 285
RBAM_004700__ 378 CTCTCGTAAAAATAGCTGTCATTCTTTTTGA 408
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