Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00744 and RBAM_004560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00744___ydaP.1.9828.seq
# -bsequence dna-align/RBAM_004560___ydaP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00744___ydaP-RBAM_004560___ydaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00744___ydaP-RBAM_004560___ydaP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00744___ydaP
# 2: RBAM_004560___ydaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1732
# Identity: 1360/1732 (78.5%)
# Similarity: 1360/1732 (78.5%)
# Gaps: 17/1732 ( 1.0%)
# Score: 5276.5
#
#
#=======================================
BSNT_00744___ 1 ATGGCACACAAAACTGCAGGACAAGCAATGACAGAGCTGCTTGAGCAATG 50
|||.||...|||||.||||||||.|.||||||.|||||||||||.|||||
RBAM_004560__ 1 ATGCCAAGTAAAACAGCAGGACACGTAATGACGGAGCTGCTTGAACAATG 50
BSNT_00744___ 51 GGGAGTTGATCATGTATACGGCATCCCCGGAGACAGTATAAATGAGTTTA 100
||||||.|.||||.||||||||||.|||||||||||.||.|||||.||||
RBAM_004560__ 51 GGGAGTCGGTCATATATACGGCATTCCCGGAGACAGCATTAATGAATTTA 100
BSNT_00744___ 101 TCGAAGAATTAAGACACGAAAGAAATCAACTGAAGTTCATTCAAACCCGC 150
||||||||.|.|||||.|||.|.|||.|.||||..|||||.||||||||.
RBAM_004560__ 101 TCGAAGAACTGAGACATGAACGGAATAACCTGACATTCATCCAAACCCGG 150
BSNT_00744___ 151 CACGAAGAGGTAGCGGCACTGGCAGCCGCGGCTGAAGCAAAACTCACCGG 200
||||||||.||.||.||.|||||.|||||||||||.||||||||.|||||
RBAM_004560__ 151 CACGAAGAAGTCGCAGCCCTGGCTGCCGCGGCTGAGGCAAAACTGACCGG 200
BSNT_00744___ 201 CAAGATCGGAGTCTGTCTGTCAATCGCAGGGCCGGGAGCGGTGCACTTAT 250
..|||||||.|||||.||.|||||||||||.|||||.||.||.||..|..
RBAM_004560__ 201 GCAGATCGGTGTCTGCCTTTCAATCGCAGGACCGGGGGCCGTTCATCTGC 250
BSNT_00744___ 251 TAAATGGTTTATATGATGCTAAAGCCGACGGCGCCCCTGTGCTGGCGATT 300
|.||.||||||||.||.||.|||||.|||||||..||.||||||||||||
RBAM_004560__ 251 TGAACGGTTTATACGACGCCAAAGCGGACGGCGTTCCGGTGCTGGCGATT 300
BSNT_00744___ 301 GCAGGACAGGTTTCTTCTGGCGAAGTCGGACGGGACTATTTCCAGGAGAT 350
||.||||||||..||||.|..|||.||||.||.|||...||.|||||.||
RBAM_004560__ 301 GCGGGACAGGTGGCTTCCGATGAAATCGGCCGTGACAGCTTTCAGGAAAT 350
BSNT_00744___ 351 TAAGCTGGAGCAAATGTTTGAGGACGTGGCCGTGTTCAA-CAGAGAGGTA 399
.||..|.|||||||||||||||||||||||.||.||||| ||| .|.|||
RBAM_004560__ 351 CAAATTAGAGCAAATGTTTGAGGACGTGGCGGTATTCAACCAG-CAAGTA 399
BSNT_00744___ 400 CATAGCGCGGAATCACTTCCGGATCTCTTAAATCAGGCGATCAGGACCGC 449
||||..||.|||.|.||.||.|||||..|.||||||||||||.|.||.||
RBAM_004560__ 400 CATACGGCAGAAGCGCTGCCCGATCTTCTGAATCAGGCGATCCGCACGGC 449
BSNT_00744___ 450 CTACAGCAAAAAAGGCGTTGCGGTATTGAGCGTGTCAGATGATTTGTTTG 499
.||||||||||||||||||||.||.||.|.|||.||.||||||||.||.|
RBAM_004560__ 450 TTACAGCAAAAAAGGCGTTGCCGTTTTAACCGTTTCTGATGATTTATTCG 499
BSNT_00744___ 500 CGGAGAAAATCAAACGGGAGCCCGTGTATACTTCACCGGTGTATATTGAA 549
||.|.|||||||||.|||||||.||.||.||.||.|||.|.||..|..||
RBAM_004560__ 500 CGCAAAAAATCAAATGGGAGCCGGTTTACACATCGCCGATATACCTCAAA 549
BSNT_00744___ 550 GGGAACCTTGAACCGAAAAAAGAACAGCTCGTCACCTGCGCCCAATATAT 599
|...|..|.||.||||||||||||||.|||||.||.|||||.||||||||
RBAM_004560__ 550 GCTGATATAGAGCCGAAAAAAGAACATCTCGTGACATGCGCGCAATATAT 599
BSNT_00744___ 600 TAATAACGCTAAGAAACCGATTATCCTGGCAGGGCAGGGAATGAAAAAGG 649
|||.|||||.||.||||||.|.||.||.||.||.||.||..|.|||...|
RBAM_004560__ 600 TAACAACGCAAAAAAACCGGTCATTCTTGCCGGCCAAGGGTTAAAATCAG 649
BSNT_00744___ 650 CGAAACGGGAGCTCTTAGAATTTGCGGACAAAGCCGCCGCTCCGATCGTT 699
|.|||..||||||..|.|.|||.||.||.|||||.|||||||||||.||.
RBAM_004560__ 650 CAAAAGAGGAGCTGCTCGCATTCGCCGATAAAGCGGCCGCTCCGATTGTC 699
BSNT_00744___ 700 GTTACACTCCCGGCAAAAGGTGTCGTTCCCGATAAGCACCCGCATTTTCT 749
.||||.||.|||||||||||.|||||.||.||.|..||.||.||.|||||
RBAM_004560__ 700 ATTACCCTTCCGGCAAAAGGCGTCGTGCCTGACAGCCATCCCCACTTTCT 749
BSNT_00744___ 750 CGGCAACCTCGGGCAGATCGGAACAAAGCCGGCTTACGAGGCAATGGAGG 799
|||.||.||||||||.|||||.||||||||.||.|||||.||||||||||
RBAM_004560__ 750 CGGGAATCTCGGGCAAATCGGCACAAAGCCCGCCTACGAAGCAATGGAGG 799
BSNT_00744___ 800 AATGTGATTTATTAATCATGCTCGGAACATCATTCCCGTACCGTGATTAT 849
||||.|||.|..|.|||||||||||.|||||.|||||.|||.|.||||||
RBAM_004560__ 800 AATGCGATCTGCTGATCATGCTCGGCACATCGTTCCCATACAGGGATTAT 849
BSNT_00744___ 850 TTGCCTGATGACACGCCGGCAATCCAGCTCGATTCAGACCCGGCAAAAAT 899
.|.||.|||||.|||||.||.||.|||||.|||||.||.|||||.|||||
RBAM_004560__ 850 CTCCCGGATGATACGCCCGCCATTCAGCTTGATTCGGATCCGGCGAAAAT 899
BSNT_00744___ 900 CGGAAAACGGTATCCGGTGACAGCGGGCCTTGTCTGCGATTCGGCTCTCG 949
|||.||.||.|||||.||.|..|||||..|.|||.|.|||.|||||||.|
RBAM_004560__ 900 CGGGAAGCGCTATCCCGTCAATGCGGGAATCGTCAGTGATGCGGCTCTGG 949
BSNT_00744___ 950 GTCTGCGCGAATTGACAGAGTATATTGAACGCAAGGAAGACAGAAGATTC 999
|.|||...||..||||.||.||.||||||...||.||||||||||||||.
RBAM_004560__ 950 GGCTGAAAGAGCTGACGGAATACATTGAATATAAAGAAGACAGAAGATTT 999
BSNT_00744___ 1000 CTGAATGCCTGCACAGAACATATGCAGCATTGGTGGAACGAAATTGAAAA 1049
.||.|.||||||||.||.||.|||.|||||||||||||.|||||.|||||
RBAM_004560__ 1000 TTGGACGCCTGCACCGAGCACATGAAGCATTGGTGGAAGGAAATCGAAAA 1049
BSNT_00744___ 1050 AGATGAGACAGAGGCAACAACA-CCGCTTAAACCTCAGCAGGTCGTGGCC 1098
.|||||.||.||.||.|| .|| |||||.||.||.|||||||||.|.|||
RBAM_004560__ 1050 GGATGAAACCGAAGCGAC-TCATCCGCTCAAGCCGCAGCAGGTCATTGCC 1098
BSNT_00744___ 1099 CGTCTTCAGGAAGCGGCAGCCGATGATGCGGTGCTCTCTGTCGATGTCGG 1148
||.||||||||.|||||.||.||.||.||.||.||.||.||.||||||||
RBAM_004560__ 1099 CGGCTTCAGGATGCGGCCGCAGAGGACGCCGTCCTGTCAGTGGATGTCGG 1148
BSNT_00744___ 1149 CACTGTGACAGTCTGGATGGCGCGTCATTTCAAAATGAACGCGAACCAGG 1198
.||.||.||.||.||||||||.||.|||||.|||||||| |||.||||
RBAM_004560__ 1149 AACGGTTACGGTGTGGATGGCCCGCCATTTTAAAATGAA---GAAGCAGG 1195
BSNT_00744___ 1199 ATTTCATCGTCTCCAGCTGGCTTGCGACAATGGGCTGCGGCCTGCCGGGA 1248
|.||.||||||||.||||||||.||.||.|||||.|||||.||.||||||
RBAM_004560__ 1196 ACTTTATCGTCTCAAGCTGGCTCGCCACGATGGGATGCGGGCTTCCGGGA 1245
BSNT_00744___ 1249 GCGATCGCCGCAAG-CTTGTCCGAACCGGAACGCCAGGCGATCGCTGTCT 1297
|||||.|||||||| |||| |||||||.||.||.|||.|.|||||..|.|
RBAM_004560__ 1246 GCGATTGCCGCAAGCCTTG-CCGAACCTGAGCGGCAGTCCATCGCCATTT 1294
BSNT_00744___ 1298 GTGGTGACGGGGGATTTTCCATGGTCATGCAGGATCTTCCGACCGCTGTC 1347
|.||.|||||.||||||||.|||||.|||||||||||.|||||.|||||.
RBAM_004560__ 1295 GCGGAGACGGCGGATTTTCAATGGTGATGCAGGATCTGCCGACAGCTGTT 1344
BSNT_00744___ 1348 AAATATAAGCTCCCGATCACAGTCGTCATTTTAAACAACGAAAATCTTGG 1397
||||||||.||.|||||.||.||.|||||.|||||||||||||||.|.||
RBAM_004560__ 1345 AAATATAAACTACCGATTACGGTTGTCATATTAAACAACGAAAATTTAGG 1394
BSNT_00744___ 1398 TATGATTGAGTACGAGCAGCAGGTCAAAGGCAATATCGACTATGTCACAA 1447
.||||||||.||.||.||||.||||||||||||.||.|||||.|||||..
RBAM_004560__ 1395 CATGATTGAATATGAACAGCGGGTCAAAGGCAACATTGACTACGTCACCC 1444
BSNT_00744___ 1448 AACTTCAAAATGTCGACTATGCCGCATTTGCAGAAAGCTGCGGAGCAAAG 1497
|.||.||||||.|.||.||.|||||.|||||||||||||||||||||||.
RBAM_004560__ 1445 AGCTGCAAAATATGGATTACGCCGCCTTTGCAGAAAGCTGCGGAGCAAAA 1494
BSNT_00744___ 1498 GGCATCAAAGTGACTAAA---GCGGAAGAGCTT-GCGCCGGCATTCCATG 1543
||||||||||||||.||| |.|||| || ||.||.||.||.||||
RBAM_004560__ 1495 GGCATCAAAGTGACGAAACACGAGGAA----TTGGCTCCTGCTTTTCATG 1540
BSNT_00744___ 1544 AGGCGCTGCACTCTGACCAACCGGTCGTTGTGGATGTCATGATTGGAAAC 1593
|.|||||..||||..|..|.||||||||..|.||.|.|.|.||.||..||
RBAM_004560__ 1541 AAGCGCTCAACTCAAATGAGCCGGTCGTCATCGACGCCGTCATCGGCGAC 1590
BSNT_00744___ 1594 GAACCGCCGCTTCCTGGCAAAATCACATACGGGCAGGCGAAAGGTTTTAG 1643
||.|||||||||||.||.||||||||.|||||.||.|||||.||.||.||
RBAM_004560__ 1591 GAGCCGCCGCTTCCGGGAAAAATCACTTACGGCCAAGCGAAGGGCTTCAG 1640
BSNT_00744___ 1644 CAAATACATGCTGAAAAACTTCTTCGAAAACCAAAAAATTGAAATGCCGT 1693
||||||||||||||||||||||||.||||||||||||||.||||||||||
RBAM_004560__ 1641 CAAATACATGCTGAAAAACTTCTTTGAAAACCAAAAAATCGAAATGCCGT 1690
BSNT_00744___ 1694 CACTGAAGAAAAGTTTGAAACGGTTATTTTAG 1725
||||.||||||||.||.||||||.|.|||||.
RBAM_004560__ 1691 CACTCAAGAAAAGCTTAAAACGGCTGTTTTAA 1722
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