Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00742 and RBAM_004550

See Amino acid alignment / Visit BSNT_00742 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_00742___mutT.1.9828.seq
#    -bsequence dna-align/RBAM_004550___mutT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00742___mutT-RBAM_004550___mutT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00742___mutT-RBAM_004550___mutT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00742___mutT
# 2: RBAM_004550___mutT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 480
# Identity:     301/480 (62.7%)
# Similarity:   301/480 (62.7%)
# Gaps:          63/480 (13.1%)
# Score: 813.5
# 
#
#=======================================

BSNT_00742___      1 GTGTAT-ACACAAGGTGCTTTTGTGATCGCACTGAACGAAAGTCAGCAAA     49
                         || .|||||||.||||||||.|||..||..||.||..|.|.|.|.|
RBAM_004550__      1 ----ATGGCACAAGGCGCTTTTGTCATCATACAAAATGACGGGCGGGACA     46

BSNT_00742___     50 TTCTGCTGGTGAAACGAAAAGATGTCCCTCTATGGGATTTGCCGGGCGGC     99
                     |..||||.||.|||||||||||.||.||.||||||||||||||.||.|||
RBAM_004550__     47 TATTGCTCGTAAAACGAAAAGACGTTCCACTATGGGATTTGCCCGGGGGC     96

BSNT_00742___    100 AGGGTTGATCCCGGGGAATCGGCTGAGGAAGCGGCAGTGCGGGAGGTATT    149
                     |||.||||....||.|||.|..||||.|..||.||.||..|.||||..||
RBAM_004550__     97 AGGATTGAAGAAGGTGAAACACCTGAAGCCGCAGCCGTCAGAGAGGCCTT    146

BSNT_00742___    150 GGAAGAAACGGGATACAATGCAGCG----CTTTCTGCGAAAA-TAGGTGT    194
                     .||||||||.||.||.||     ||    |.|.||||.|||| ..||||.
RBAM_004550__    147 CGAAGAAACCGGGTATAA-----CGTGACCATCCTGCAAAAAGCCGGTGA    191

BSNT_00742___    195 TTACCAAAGGCCAAAGTTTCAAGATGAACAGCATCTGTTTTTCGGAAGCA    244
                     .||..|||||||....|||.|||||..|||..||.|.||..|||||..||
RBAM_004550__    192 GTATGAAAGGCCGGCATTTGAAGATACACAAAATGTATTCATCGGAGCCA    241

BSNT_00742___    245 TAACAGGCGGACAAGCAGTGGCTG----ACGGCATAGAGACAGCGGGATT    290
                     |.||.||.|||..|.|    ||||    ||||....||.||.||.|..||
RBAM_004550__    242 TTACCGGAGGAACACC----GCTGATGAACGGGCCGGAAACCGCCGCTTT    287

BSNT_00742___    291 AAAGTGGGTTTCCCTGGAGCGTTTGCCGCTTTTTATGGTGCCGAACCGAA    340
                     |...|||.||||||...|.||..|||||||.||.||||||||||||.|||
RBAM_004550__    288 ACGCTGGTTTTCCCCAAACCGGCTGCCGCTGTTCATGGTGCCGAACAGAA    337

BSNT_00742___    341 AAAGGCAGATCAATGA---TTTCAAGAATGGCGC-TCAAGAT-GTAAATG    385
                     ||.||||.||.||.||   ..||   |||||.|| .||| || ||||  |
RBAM_004550__    338 AACGGCAAATAAAAGACGGACTC---AATGGGGCGGCAA-ATCGTAA--G    381

BSNT_00742___    386 TCACCGTC---AAGGATAGAGGGTTGCTCGCGGCGATC-------GACCT    425
                     .||  |||   |||||.|||....||.|       |||       ||.||
RBAM_004550__    382 GCA--GTCCTTAAGGACAGAAATCTGTT-------ATCCATCCTTGATCT    422

BSNT_00742___    426 GTT--GAAAAGAAGACTGGGCAAGTGA---    450
                     |.|  ||||| ||| |||.|  ||| |   
RBAM_004550__    423 GCTAAGAAAA-AAG-CTGAG--AGT-ATAG    447


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