Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00740 and RBAM_004470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00740.1.9828.seq
# -bsequence dna-align/RBAM_004470___lrpC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00740-RBAM_004470___lrpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00740-RBAM_004470___lrpC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00740
# 2: RBAM_004470___lrpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 544
# Identity: 334/544 (61.4%)
# Similarity: 334/544 (61.4%)
# Gaps: 110/544 (20.2%)
# Score: 1250.0
#
#
#=======================================
BSNT_00740 1 ATGTTCGGAAAACATTCATTTTTACATGCCTTTTCTAGGGAACTGTACTT 50
RBAM_004470__ 0 -------------------------------------------------- 0
BSNT_00740 51 GTCATTTACAAAAATACCCGAGATAATGTGTACAAAATCAAAAAAGAAGG 100
RBAM_004470__ 0 -------------------------------------------------- 0
BSNT_00740 101 ATGTTGAAATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTG 150
||||||||.||..|..|||||||||..||||||.|.||||||
RBAM_004470__ 1 --------ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTG 42
BSNT_00740 151 AAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAGAAAAATTAAGCT 200
.||..|||||||||..||||.|||.|||||.|.|||||||||||.||..|
RBAM_004470__ 43 CAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAGAAAAATCAAATT 92
BSNT_00740 201 GTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCA 250
|||..||||.||.||.|||||.||.||.||||||||||||||.||.|||.
RBAM_004470__ 93 GTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCG 142
BSNT_00740 251 TCATTAAGCAATACACGCTGGAGGTCGACCAGAAAAAACTGGGGCTTCCC 300
|||||||||..||.||..||||..|.||.||.|||||..|.||||||||.
RBAM_004470__ 143 TCATTAAGCGCTATACATTGGACATTGATCAAAAAAAGATCGGGCTTCCT 192
BSNT_00740 301 GTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGGTT 350
||||||||||||||.|||||.||.||.|||||||...|.|||||.|..||
RBAM_004470__ 193 GTTTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAATT 242
BSNT_00740 351 CAAAAGCTATATTCAA-ACATTGCCGAATATTGAATTTTGCTACCGGATT 399
.||||.|||.|||||| .|||| ||.||.|||||||||||.|..|||.|.
RBAM_004470__ 243 TAAAACCTACATTCAATCCATT-CCCAACATTGAATTTTGTTTTCGGGTC 291
BSNT_00740 400 GCGGGTGCAGCCTGCTATATGCTGAAAATCAATGCCGAAAGCCTCGAAGC 449
||.||.||.||.||.|||||||||||.||.||.||.||.|||||.|||.|
RBAM_004470__ 292 GCCGGGGCGGCGTGTTATATGCTGAAGATGAACGCGGACAGCCTGGAAAC 341
BSNT_00740 450 GGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTC 499
|.|.|||.|.|||||||||...||.||.||.||.||.||||||||.||.|
RBAM_004470__ 342 GATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCC 391
BSNT_00740 500 ACGTCATTTTCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG 543
|.|||||||||||||||||||||||.|||||||..|.||.||||
RBAM_004470__ 392 ATGTCATTTTCTCAGAAATTGACACAAAAAACGTCCTCGATTAG 435
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