Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00740 and RBAM_004470

See Amino acid alignment / Visit BSNT_00740 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_00740.1.9828.seq
#    -bsequence dna-align/RBAM_004470___lrpC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00740-RBAM_004470___lrpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00740-RBAM_004470___lrpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00740
# 2: RBAM_004470___lrpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 544
# Identity:     334/544 (61.4%)
# Similarity:   334/544 (61.4%)
# Gaps:         110/544 (20.2%)
# Score: 1250.0
# 
#
#=======================================

BSNT_00740         1 ATGTTCGGAAAACATTCATTTTTACATGCCTTTTCTAGGGAACTGTACTT     50
                                                                       
RBAM_004470__      0 --------------------------------------------------      0

BSNT_00740        51 GTCATTTACAAAAATACCCGAGATAATGTGTACAAAATCAAAAAAGAAGG    100
                                                                       
RBAM_004470__      0 --------------------------------------------------      0

BSNT_00740       101 ATGTTGAAATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTG    150
                             ||||||||.||..|..|||||||||..||||||.|.||||||
RBAM_004470__      1 --------ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTG     42

BSNT_00740       151 AAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAGAAAAATTAAGCT    200
                     .||..|||||||||..||||.|||.|||||.|.|||||||||||.||..|
RBAM_004470__     43 CAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAGAAAAATCAAATT     92

BSNT_00740       201 GTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCA    250
                     |||..||||.||.||.|||||.||.||.||||||||||||||.||.|||.
RBAM_004470__     93 GTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCG    142

BSNT_00740       251 TCATTAAGCAATACACGCTGGAGGTCGACCAGAAAAAACTGGGGCTTCCC    300
                     |||||||||..||.||..||||..|.||.||.|||||..|.||||||||.
RBAM_004470__    143 TCATTAAGCGCTATACATTGGACATTGATCAAAAAAAGATCGGGCTTCCT    192

BSNT_00740       301 GTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGGTT    350
                     ||||||||||||||.|||||.||.||.|||||||...|.|||||.|..||
RBAM_004470__    193 GTTTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAATT    242

BSNT_00740       351 CAAAAGCTATATTCAA-ACATTGCCGAATATTGAATTTTGCTACCGGATT    399
                     .||||.|||.|||||| .|||| ||.||.|||||||||||.|..|||.|.
RBAM_004470__    243 TAAAACCTACATTCAATCCATT-CCCAACATTGAATTTTGTTTTCGGGTC    291

BSNT_00740       400 GCGGGTGCAGCCTGCTATATGCTGAAAATCAATGCCGAAAGCCTCGAAGC    449
                     ||.||.||.||.||.|||||||||||.||.||.||.||.|||||.|||.|
RBAM_004470__    292 GCCGGGGCGGCGTGTTATATGCTGAAGATGAACGCGGACAGCCTGGAAAC    341

BSNT_00740       450 GGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTC    499
                     |.|.|||.|.|||||||||...||.||.||.||.||.||||||||.||.|
RBAM_004470__    342 GATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCC    391

BSNT_00740       500 ACGTCATTTTCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG    543
                     |.|||||||||||||||||||||||.|||||||..|.||.||||
RBAM_004470__    392 ATGTCATTTTCTCAGAAATTGACACAAAAAACGTCCTCGATTAG    435


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