Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00738 and RBAM_004450

See Amino acid alignment / Visit BSNT_00738 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_00738___ydaH.1.9828.seq
#    -bsequence dna-align/RBAM_004450___ydaH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00738___ydaH-RBAM_004450___ydaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00738___ydaH-RBAM_004450___ydaH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00738___ydaH
# 2: RBAM_004450___ydaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 819
# Identity:     619/819 (75.6%)
# Similarity:   619/819 (75.6%)
# Gaps:          18/819 ( 2.2%)
# Score: 2291.5
# 
#
#=======================================

BSNT_00738___      1 GTGCATGTCATTACAACACAAGTACTTTTTATTTTTTGTTTTTTATTGCT     50
                     .||||.||.|||||..||||||||||.|||||.||.||||||.|..||||
RBAM_004450__      1 TTGCACGTTATTACTTCACAAGTACTGTTTATCTTCTGTTTTCTGCTGCT     50

BSNT_00738___     51 GATTCACTCGATAGAAAC-CTTAGCCTATGCTACAAGGCTTTCCGGGGCC     99
                     |||.||.|||||.||||| ||| ||||||||.|||.|||||||.||.||.
RBAM_004450__     51 GATACATTCGATTGAAACGCTT-GCCTATGCAACACGGCTTTCTGGCGCG     99

BSNT_00738___    100 CGCGTTGGATTTATTGCGTCCGCGCTTTCCCTGTTTAATGTCATGGTCAT    149
                     .|.||.||.|||||.|||||||||||.||..|.|||||||||||||||||
RBAM_004450__    100 AGAGTCGGTTTTATCGCGTCCGCGCTGTCATTATTTAATGTCATGGTCAT    149

BSNT_00738___    150 CGTGTCCAGAATGTCGAACATGGTGCAGCAGCCCTTTACCGGGCATTTAA    199
                     ||||||..|.|||||.||||||||.||||||||.||||||||.|||.|.|
RBAM_004450__    150 CGTGTCTCGCATGTCAAACATGGTTCAGCAGCCGTTTACCGGACATCTGA    199

BSNT_00738___    200 TTGATGATGCTGGAAAAAACGCACTGGCGATTGTAGGGGACCAGTTCCGC    249
                     ||||||..||.|||..||||||.|||.|..||||.||.|..|||||.||.
RBAM_004450__    200 TTGATGCCGCCGGATCAAACGCCCTGTCTCTTGTGGGTGCTCAGTTTCGA    249

BSNT_00738___    250 TTTTTAATTTTCGGATCGACAGTCGGCACCATTTTGGGCATTATCCTGCT    299
                     ||||||||.|||||.||.||.|||||.||.||..|.|||||    ||| |
RBAM_004450__    250 TTTTTAATATTCGGCTCCACGGTCGGAACGATGCTCGGCAT----CTG-T    294

BSNT_00738___    300 C-----CCGTCTTTTGTCGCTCTTTTTTCACGGGCGATTATTCACTTGGC    344
                     |     |||.|.||.|||||..|.||.||..||||||||||.||||||||
RBAM_004450__    295 CTTTTGCCGACATTCGTCGCGTTATTCTCCAGGGCGATTATACACTTGGC    344

BSNT_00738___    345 GGGCGGCGGCGGCTCCGTTTTTCAAGTTTTCCGAAAGGGGTTCTCGAAAC    394
                     ||.|||.||.||||||||..|.||.||.||...|||.||.||.||   ||
RBAM_004450__    345 GGACGGAGGAGGCTCCGTCATGCAGGTATTTAAAAAAGGATTTTC---AC    391

BSNT_00738___    395 ---AAGGATTCAAAAATGCCCTTTCCTATTTGCGTCTGCCGTCTATTTCA    441
                        |.||..|.||..||||.|.|||.|||.|..|.||||||||..|.||.
RBAM_004450__    392 TGAACGGGCTGAAGCATGCGCGTTCTTATATCAGACTGCCGTCAGTCTCC    441

BSNT_00738___    442 TATGTAAAAGGATTTCATATGCGCTTGATTCCGAAGCGTTTGTTTGTCAT    491
                     |||.|||||||..||||..|.||..||||||||||.||.|||||||||||
RBAM_004450__    442 TATTTAAAAGGGCTTCAATTCCGAATGATTCCGAAACGCTTGTTTGTCAT    491

BSNT_00738___    492 CAACATGCTGATCACATCGATTTATACGATTGGCGTGCTTTCGGCTTTAT    541
                     .||.|||.|.||.||.||.|||||.|||||.||.||.||.||.|||.|.|
RBAM_004450__    492 TAATATGGTCATTACGTCTATTTACACGATCGGTGTTCTGTCCGCTCTGT    541

BSNT_00738___    542 ACGCAGGCCTTCTGGCTCCGGAGCGCAGTACGACAGCCGTCATGGCTTCG    591
                     ||||.|||||||||||.||.||||.|||.|||||.|||||.|||||.||.
RBAM_004450__    542 ACGCCGGCCTTCTGGCGCCTGAGCACAGCACGACCGCCGTGATGGCATCA    591

BSNT_00738___    592 GGTTTAATCAACGGAATTGCGACGATGCTACTGGCCATTTTTGTTGATCC    641
                     ||.||||||||||||.|||||||.|||||..||||..|.||||||||.||
RBAM_004450__    592 GGCTTAATCAACGGAGTTGCGACTATGCTGTTGGCTGTGTTTGTTGACCC    641

BSNT_00738___    642 TAAGGTATCCGTTCTAGCTGATGATGTGGCAAAAGGAAAACGAAGCTATA    691
                     .||.||||||||.||.||.||.||||||||.||.||.||.||.|||||..
RBAM_004450__    642 GAAAGTATCCGTACTGGCAGACGATGTGGCGAAGGGCAAGCGCAGCTACG    691

BSNT_00738___    692 TCTATTTAAAATGGACCTCTGTCACAATGGTCACATCAAGGGTGGCGGGC    741
                     |||..|||||||||||.||..|.||.|||||.||||||||||||||||||
RBAM_004450__    692 TCTCCTTAAAATGGACATCATTGACGATGGTGACATCAAGGGTGGCGGGC    741

BSNT_00738___    742 ACACTCCTCGCCCAGCTCATGTTTATTCCGGGGGCCTACTATATCGCGTG    791
                     ||.||.||||||||||||.|.||.||.||.||.||.||.||||||||.||
RBAM_004450__    742 ACGCTTCTCGCCCAGCTCGTATTCATCCCCGGCGCTTATTATATCGCCTG    791

BSNT_00738___    792 GCTGACAAAGTGGTTTTAA    810
                     |.||||.||.|||.|.|||
RBAM_004450__    792 GGTGACGAAATGGATGTAA    810


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00738 and RBAM_004450

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
