Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00736 and RBAM_004430
See
Amino acid alignment /
Visit
BSNT_00736 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_00736___ydaF.1.9828.seq
# -bsequence dna-align/RBAM_004430___ydaF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00736___ydaF-RBAM_004430___ydaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00736___ydaF-RBAM_004430___ydaF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00736___ydaF
# 2: RBAM_004430___ydaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 664
# Identity: 371/664 (55.9%)
# Similarity: 371/664 (55.9%)
# Gaps: 152/664 (22.9%)
# Score: 942.5
#
#
#=======================================
BSNT_00736___ 1 ATGTTCACTTGCAAGGT-AAAT--GAGCACATC--ACCATCCGATT-ATT 44
.||||..|.| || |||| |.|.||||| ||.|||.|||| .||
RBAM_004430__ 1 GTGTTTTCCT-----GTCAAATCCGGGAACATCTGACGATCAGATTGCTT 45
BSNT_00736___ 45 GGAGCC---GAATGATGCGGAGCGGCTGGCCGAA-------CTCATTAT- 83
||| ||| |||.|||| |||| || .||||
RBAM_004430__ 46 ---GCCAAAGAA-GATACGGA---------CGAATTGTATTCT-GTTATG 81
BSNT_00736___ 84 --CCAAAATCAGCAGCGGCTCAGCCAGTGGCTGTTTTGGGCGGAA-AATC 130
.|.||||||..|.|..||||||.|.|||||....||||||||| ||
RBAM_004430__ 82 AAGCGAAATCAAAACCATCTCAGCGAATGGCTCAGCTGGGCGGAAGAA-- 129
BSNT_00736___ 131 CAAGCAGCGCT------GACACGTACAGAGAAACCATCATTCCAGAATGG 174
|.| ||| ||.||.|||.|.||....|||||.||.||||||
RBAM_004430__ 130 ----CTG-GCTGATTTCGATACATACCGCGATGTGATCATCCCTGAATGG 174
BSNT_00736___ 175 CGGCATCAGTATGCAGACCTGAACGGCATTGAGGCGGGGCTCCTTTATGA 224
||..||.|.||.||.||....||.||..||||.||.||..| .|||.|||
RBAM_004430__ 175 CGCTATAAATACGCGGAAGAAAATGGGTTTGACGCCGGAAT-TTTTGTGA 223
BSNT_00736___ 225 CGGCAGCC---TATGCGGCATGATCAGCCTGCATAACCTTGATCAAGTGA 271
.|| ||| |.|||||||||||||||.|.|||||..|.|||..||..|
RBAM_004430__ 224 AGG--GCCGGTTTTGCGGCATGATCAGCATCCATAATGTCGATACAGCCA 271
BSNT_00736___ 272 ATCGAAAGGCTGAAATCGGATATTGGATTGCTAAAGACTTTGAAGGGAAA 321
|||.|||.||.||.|||||.||.|||||.|.|..|||...||||||....
RBAM_004430__ 272 ATCAAAAAGCAGAGATCGGCTACTGGATGGATCGAGAGCATGAAGGATTC 321
BSNT_00736___ 322 GGCATTATTAC----AGCTGCCTGCCGAAAACTCATTACGTATGCTTTTG 367
||||||||.|| |||||||.|.|| .|.||.|...||||.|||.
RBAM_004430__ 322 GGCATTATCACCGCAAGCTGCCGGGCG----GTTATCAACCATGCATTTC 367
BSNT_00736___ 368 AAGAGCTTGAGCTGAATCGTGTGGCGATCTGTGCGGCTGTCGGAAACGAA 417
|.||.||.|..|||||.||..|...|||..|.|||||| ||||..||
RBAM_004430__ 368 AGGATCTCGGCCTGAACCGCATTATGATTAGCGCGGCT----GAAAAAAA 413
BSNT_00736___ 418 ----AAAAGCAGAGCGGTTCCGGAGCGGATCGGGTTTCTAG-AGGAAGGA 462
||||||||.||.||..||||.|||.||||.|||| || |.||||||
RBAM_004430__ 414 CATGAAAAGCAGGGCAGTGGCGGAACGGCTCGGATTTC-AGAAAGAAGGA 462
BSNT_00736___ 463 AGGGCACGGGATGGCTTATACGTAAACGGCAGGC--ATCACGACCTCGTC 510
..|.|..|.||.|||.|.|.||||.|.||| || ||||.|||...||.
RBAM_004430__ 463 CTGACGAGAGAAGGCATTTTCGTACAGGGC--GCCTATCATGACACGGTG 510
BSNT_00736___ 511 TACTACAGTCTGTTAAAGCGTGAATGG---GAAG------------GC-- 543
.|||||||..||.|.|||||.|||||| |||| ||
RBAM_004430__ 511 AACTACAGCATGCTGAAGCGGGAATGGAGCGAAGATCGGCAGAATAGCAC 560
BSNT_00736___ 544 ------------------------------GAAAAATAA----------- 552
|||||.|||
RBAM_004430__ 561 ATTTCTTGGTTTAAATGTCTCCCCAATGTGGAAAAGTAACAGTGGAGACG 610
BSNT_00736___ 552 -------------- 552
RBAM_004430__ 611 TTAAAAAGGAGTGA 624
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.