Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00728 and RBAM_004390
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:30
# Commandline: needle
# -asequence dna-align/BSNT_00728___mtlR.1.9828.seq
# -bsequence dna-align/RBAM_004390___mtlR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00728___mtlR-RBAM_004390___mtlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00728___mtlR-RBAM_004390___mtlR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00728___mtlR
# 2: RBAM_004390___mtlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2159
# Identity: 1542/2159 (71.4%)
# Similarity: 1542/2159 (71.4%)
# Gaps: 148/2159 ( 6.9%)
# Score: 5351.5
#
#
#=======================================
BSNT_00728___ 1 ATGTATATGACTGCCAGAGAACAAAAGCTGTTAAAGCACTTATTATTACA 50
|||||||||||.||.|||||||||||..|..|.||.||..|||||.|.||
RBAM_004390__ 1 ATGTATATGACAGCGAGAGAACAAAAATTAATGAAACATCTATTACTGCA 50
BSNT_00728___ 51 AAACAGATATATAACCGTAACTGAGCTTGCTG-AGCTGATGCAAGTCAGC 99
.|||.|.||....||.||...|||.||.||.| |||| .|.|||||||||
RBAM_004390__ 51 GAACCGGTACGAGACAGTGCATGAACTGGCGGAAGCT-TTACAAGTCAGC 99
BSNT_00728___ 100 ACGAGAACCATTCACAGGGAACTCAAATCAATTAAACCGCTGATGGAAAC 149
||.||||||.|||||.|.||..|.|||.||||.||||||.||||||||.|
RBAM_004390__ 100 ACAAGAACCGTTCACCGCGAGTTAAAAACAATCAAACCGATGATGGAATC 149
BSNT_00728___ 150 CGTGGGGCTTACGTTAGATAAACAGCCCGGTAAAGGGTTGAAAGCAGTGG 199
..|.||.||..|..|.||||||||||||||.|||||..|||||||.||.|
RBAM_004390__ 150 ATTCGGTCTGGCACTTGATAAACAGCCCGGCAAAGGACTGAAAGCGGTAG 199
BSNT_00728___ 200 GAAGTCCCGAGGATAAACAAAAGCTGCTTACTGATTTATCATATGAACAG 249
|||..||.|||||.||||||||.||.||..|.||..|.||.|||||||||
RBAM_004390__ 200 GAAACCCGGAGGACAAACAAAAACTCCTGTCAGACCTGTCCTATGAACAG 249
BSNT_00728___ 250 CATGAATACAGCGCCGACGAACGGAAACTGCTCATTCTTTGTTCGTTATT 299
.|||||||||||||.||.||.||||||||..|.|||||.|||||..||||
RBAM_004390__ 250 TATGAATACAGCGCTGAGGAGCGGAAACTTTTAATTCTATGTTCACTATT 299
BSNT_00728___ 300 AGAGTCTCAGGAGCCCGTCAAACTGTACACGCTTGCTCATGATCTCCAGG 349
|||||||||.|||||..||||.||.||||..||.||..|.||.||.||.|
RBAM_004390__ 300 AGAGTCTCAAGAGCCGATCAAGCTCTACAGTCTGGCGAACGAACTGCAAG 349
BSNT_00728___ 350 TGACGAATGCCACGGTCAGCTATGACTTAGATGAGCTCGAGAAGTGGATT 399
|.||.||.||.|||.|||||||||||.|.||||||||.||||..||||||
RBAM_004390__ 350 TAACAAACGCGACGATCAGCTATGACCTGGATGAGCTGGAGACTTGGATT 399
BSNT_00728___ 400 TCTCCCTTCGGACTGACACTGATCCGCAAAAGAGGTTTTGGCATCCAGCT 449
.|.||||||||..||||.||||||||.|||||.||.||.|||||.|||||
RBAM_004390__ 400 GCGCCCTTCGGCTTGACGCTGATCCGAAAAAGGGGCTTCGGCATTCAGCT 449
BSNT_00728___ 450 CATAGGGCCGGAGAATGCGAAACGGAAAATTGTCGGCAACTTGATTGTGA 499
.|..||||||||.|||||||||||||||||.||||||||..|.||.||.|
RBAM_004390__ 450 GACGGGGCCGGAAAATGCGAAACGGAAAATCGTCGGCAATCTCATCGTCA 499
BSNT_00728___ 500 ACCGTCTCGACATCCAAATGTTTTTGGAAGCGGTTGAATTAAACATCAAA 549
||||.||.||.||.||||..||||||||||||||||||||.||.||.|||
RBAM_004390__ 500 ACCGCCTTGATATTCAAAGCTTTTTGGAAGCGGTTGAATTGAATATTAAA 549
BSNT_00728___ 550 GGAAAAACCGATTCTTCAGAGAAAATGTTCGGGGTTGTCAGCAAAGGTGA 599
||||||.|.|||..|.|.||.|||||||||||.||.||.|..||||..||
RBAM_004390__ 550 GGAAAACCGGATGATGCTGAAAAAATGTTCGGCGTCGTAAATAAAGCGGA 599
BSNT_00728___ 600 GCTGCTAAAAATGGAGCGCATCTTATTTCAGCTCAAAGAAAAAATCGCTT 649
.||..|.||||||||.||..|||||.||||||||||.|||||||||||..
RBAM_004390__ 600 ACTTTTGAAAATGGACCGGCTCTTAATTCAGCTCAAGGAAAAAATCGCGA 649
BSNT_00728___ 650 TTTCATTGTCCGACAGCTCCTATATAGCGCTCGTCGTCCATCTGACGTAT 699
|..|.||.||.||||||||.||.||.|||||.|..||.|||.|.||.|.|
RBAM_004390__ 650 TCGCCTTATCTGACAGCTCATACATGGCGCTTGCGGTTCATTTAACCTTT 699
BSNT_00728___ 700 GCGATCGAACGAATTAAGCTTGGGGAAACCATCACCATGGAGCAAAATGA 749
|||||.||.||.||.|.|||.||.||||||||.||.||||||.|....||
RBAM_004390__ 700 GCGATGGACCGGATCAGGCTCGGAGAAACCATTACGATGGAGGATTCGGA 749
BSNT_00728___ 750 GCTTGAGGAACTGAAGAATGCGAAGGAATCCAGCTCGGCTCTTGAAATCG 799
.||..|.|..|||.||.|..|||||||.|.|.||||.||.||.|||||
RBAM_004390__ 750 ACTAAAAGCGCTGCAGCAGACGAAGGAGTACGGCTCTGCGCTGGAAAT-- 797
BSNT_00728___ 800 CGGGC----GAGCTTGAACGTGCCTTCGGCGTGACGATTCCAGAGGCGGA 845
||| |||||||||...||.||||||||..|.|||||.||.||.||
RBAM_004390__ 798 --GGCAAAAGAGCTTGAAAAAGCGTTCGGCGTTTCAATTCCGGAAGCTGA 845
BSNT_00728___ 846 GGTCGGCTATATTACAATCCATCTTCGAAGCGCCAATCGAAAATACAAAA 895
|.||||.|||||.||.||.|||.|.||.||||||||.||.||||||||||
RBAM_004390__ 846 GATCGGATATATCACCATTCATTTGCGGAGCGCCAACCGCAAATACAAAA 895
BSNT_00728___ 896 CAGAATACAAAGCGCAGGAAATTGAGCTGGAAACAGCCCTGCAAACAAAG 945
|.||||.||||.||.|.||.||.|||.|.|||||.|||.|||||||.|||
RBAM_004390__ 896 CGGAATTCAAACCGGAAGACATAGAGGTTGAAACGGCCTTGCAAACGAAG 945
BSNT_00728___ 946 CGGCTCATTGCTTTTATTTCAGACAAAATCAGAATGGATCTGACGAAAAA 995
|.|||.||.|..||.|||||.||.|||||.|.|||.|||||||||.||||
RBAM_004390__ 946 CAGCTGATCGGCTTCATTTCTGAAAAAATTAAAATTGATCTGACGGAAAA 995
BSNT_00728___ 996 CTACTCTTTATATGAAGGCTTGATTGCCCATTTGGAGCCGGCCGTCAGCC 1045
...||||||||||||.||.||.||.||||||.|.|||||.||..|||.||
RBAM_004390__ 996 TGGCTCTTTATATGACGGTTTAATCGCCCATCTCGAGCCTGCGATCAACC 1045
BSNT_00728___ 1046 GCATAAAAGAAAATATTGAGATATACAATCCGATGAAGGAACAAATCAAG 1095
|..|||||||||||||.||.||.|||||.|||||||..||.|||||.||.
RBAM_004390__ 1046 GGGTAAAAGAAAATATCGACATGTACAACCCGATGACCGAGCAAATTAAA 1095
BSNT_00728___ 1096 CGCGATTATTTTCTGCTTTATATGGCGATCGAAGAAGGCGTCGAAAAGTA 1145
|||||.||.||||||||.||.|||||..|.||||||||..|.|||||.|.
RBAM_004390__ 1096 CGCGACTACTTTCTGCTGTACATGGCCGTAGAAGAAGGAATGGAAAAATT 1145
BSNT_00728___ 1146 TTTTCCGGGCATGTCCTTT-ACTGATGATGAAATCGCTTTTATCGTTCTT 1194
.||||||||..| ||.||| .|||||.||||.||||||||.|||||||||
RBAM_004390__ 1146 CTTTCCGGGGCT-TCTTTTCTCTGATAATGAGATCGCTTTCATCGTTCTT 1194
BSNT_00728___ 1195 CACTTTGGCTCGGCTCTTGAAATCAAAAAAGAAGAAGCAAAAGTGAAAGC 1244
|||||.|||||.|||.|.|||||||||...|||||.||.||..|.|||||
RBAM_004390__ 1195 CACTTCGGCTCCGCTTTGGAAATCAAACGGGAAGAGGCGAAGATCAAAGC 1244
BSNT_00728___ 1245 GCTTGTCGTCTGCTCAAGCGGGATCGGCTCCTCGAAAATGCTTGCCTCCA 1294
|||..|||||||.||||||||.|||||.||.||.||||||||.||.||||
RBAM_004390__ 1245 GCTGATCGTCTGTTCAAGCGGCATCGGGTCGTCCAAAATGCTCGCATCCA 1294
BSNT_00728___ 1295 GACTGAAAAAAGAAATGCCGGAAATTGAATCGTTTGATATGTCATCCCTG 1344
|.|||||||||||..|..|||||||....||.|||||||||||.|||||.
RBAM_004390__ 1295 GGCTGAAAAAAGAGCTTTCGGAAATCCGTTCCTTTGATATGTCTTCCCTC 1344
BSNT_00728___ 1345 ATCGAGCTAAAGGGGAAGGAT-----GTTCA-AGCCTATGATATGATTGT 1388
|||||.|| ||||||| ..||| .||.|||||.|||||.||
RBAM_004390__ 1345 ATCGAACT------GAAGGATCGAGACATCACCGCGTATGACATGATCGT 1388
BSNT_00728___ 1389 GTCCACTGTACCGATTCCTTATGAAAACATTGATTACATCATGGTCAGCC 1438
.||.||.||.|||||.||.||||||||||||||||||.||||||||||.|
RBAM_004390__ 1389 ATCAACCGTTCCGATCCCGTATGAAAACATTGATTACGTCATGGTCAGTC 1438
BSNT_00728___ 1439 CGCTATTAAATGAGGAAGACGCAAACCAGGTCAAGCAGTATATCAAGCGG 1488
||||.|||||.||.||||||||..|.||||||||||||||.|||||..|.
RBAM_004390__ 1439 CGCTTTTAAACGAAGAAGACGCTGATCAGGTCAAGCAGTACATCAAAAGA 1488
BSNT_00728___ 1489 AAGATTCCCCTTATTCTTAACAAAAAAAGAAGCACG----AAG-GAAGAG 1533
||.|||||.||.||||||.|||||||||||| ||| ||| ||||||
RBAM_004390__ 1489 AAAATTCCGCTGATTCTTGACAAAAAAAGAA--ACGGCAAAAGAGAAGAG 1536
BSNT_00728___ 1534 GCGCAGCAAGCTGATGTACCTGACATGCTAGAGGCGGCGGAAAGCATAGG 1583
..||||| |.||....|||||.|||||.||.||||| .|
RBAM_004390__ 1537 AAGCAGC---CGGAGACGCCTGATATGCTGGAAGCGGC----------CG 1573
BSNT_00728___ 1584 GCGGTAT-----AT-----GGAGGTTATTCAAAATGTTCTGCGCCATTTT 1623
||.|||| || ||.||||||.||||..||.|||||..|.|||
RBAM_004390__ 1574 GCCGTATGGCGCATTACGCGGCGGTTATCCAAAGCGTGCTGCGGAACTTT 1623
BSNT_00728___ 1624 ACGCTAGCTCAACTC----AAAACAAACCCGGACCATAGCATGCTTCTGC 1669
|.|.||||.|| .|..|||||.|||...||
RBAM_004390__ 1624 ----TCGATCAAATCCATTGATTCAAACACGGCGTAT------------- 1656
BSNT_00728___ 1670 TAGAGC--TTTTTCAAC-------------AGCTG----AAGAAGGATGG 1700
|||| |||||.||| .|||| |||||||||
RBAM_004390__ 1657 --GAGCTGTTTTTGAACCGTATGTTTGACATGCTGGAGCAAGAAGGAT-- 1702
BSNT_00728___ 1701 CCTGATCCGTGATCCGGAAAAAGCCGAGGTTTGCCTGGCTGAGCGGGAGA 1750
||.|.|.|.||.|..|||||.|||.|....||||.||||||||.||..
RBAM_004390__ 1703 --TGGTTCATAATGCCCAAAAAACCGCGCAGCGCCTTGCTGAGCGTGAAC 1750
BSNT_00728___ 1751 AACAAGGGGGATTGGGAATCCCCGGAACAAACATGGCGCTTTATCATCTC 1800
.|||.||.|||.|.||.||.||.|||||....|||||.||.||.||||||
RBAM_004390__ 1751 GACAGGGCGGACTCGGCATTCCGGGAACGGCGATGGCCCTGTACCATCTC 1800
BSNT_00728___ 1801 AAAAATGATGAAATCGTCCTGCCTTTTTTCAAAATGTTTGATCTCAGCAC 1850
||||||||.|||||.|||..|||||||||||||||.|.||||.|.| |..
RBAM_004390__ 1801 AAAAATGAAGAAATTGTCACGCCTTTTTTCAAAATTTATGATTTGA-CGG 1849
BSNT_00728___ 1851 CTCCTATGAAGTG--GATGGCATGGACGGAATTACCCTCA-GGATGA-CA 1896
|||| |||.|||| .|.|||||||||||||.|.||||.| .|..|| |.
RBAM_004390__ 1850 CTCC-ATGCAGTGTCAAAGGCATGGACGGAAATTCCCTGACCGTCGACCG 1898
BSNT_00728___ 1897 CGCATCCTCGTCATGATGGCGCCTGGCTCATTAT--CTGCTGAAGGCTCG 1944
|||.| |.||.||||||||||| ||||.| ||| |.||||||||.|||
RBAM_004390__ 1899 CGCTT--TGGTGATGATGGCGCC-GGCTGA-TATGGCCGCTGAAGGGTCG 1944
BSNT_00728___ 1945 GAGATTTTAAGCGCGATCAGCTCGGCAATTATCGAGAGCGGAG------- 1987
||.||..||||.|||.||||||||||.||.||||||..||.||
RBAM_004390__ 1945 GAAATACTAAGTGCGGTCAGCTCGGCCATCATCGAGTCCGAAGGCAGTAT 1994
BSNT_00728___ 1988 -AAAGCATGGCGGGGTTTCAG--GAAGAAGGAGAACAAGAATTGTATCAG 2034
||||| .||.||| |.||.|.|||..| ||.||.||..|.
RBAM_004390__ 1995 AAAAGC--------CTTCCAGACGGAGGATGAGGCC--GATTTATACAAA 2034
BSNT_00728___ 2035 CGGTTAAAC-CGCATATTTT-TCA---CAT---GGATGAAAGAAAAAAAC 2076
||.|||||| .|| |.|||| ||| ||| ||| |||||.|.|
RBAM_004390__ 2035 CGTTTAAACAAGC-TGTTTTATCATTTCATTCAGGA-GAAAGGACA---- 2078
BSNT_00728___ 2077 ATACTGTAA 2085
.|.||||
RBAM_004390__ 2079 --GCGGTAA 2085
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