Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00726 and RBAM_004380

See Amino acid alignment / Visit BSNT_00726 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_00726___ycsN.1.9828.seq
#    -bsequence dna-align/RBAM_004380___ycsN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00726___ycsN-RBAM_004380___ycsN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00726___ycsN-RBAM_004380___ycsN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00726___ycsN
# 2: RBAM_004380___ycsN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 915
# Identity:     692/915 (75.6%)
# Similarity:   692/915 (75.6%)
# Gaps:          24/915 ( 2.6%)
# Score: 2538.0
# 
#
#=======================================

BSNT_00726___      1 ATGCAGCGTATTCAATTGGCGGAGGATCTTCAATTTTCAAGAGTCATACA     50
                     ||||||||.|||||||||||.||.||.||..|||||||||||||.|||||
RBAM_004380__      1 ATGCAGCGCATTCAATTGGCTGAAGACCTGGAATTTTCAAGAGTGATACA     50

BSNT_00726___     51 CGGGCTTTGGCGGCTGAATGAATGGAACTATTCAGATGCTGAACTTCTGA    100
                     ||||||||||||.|||||.||||||||...||||||.|..||.||.||||
RBAM_004380__     51 CGGGCTTTGGCGTCTGAACGAATGGAATGTTTCAGACGGAGAGCTGCTGA    100

BSNT_00726___    101 GCCTCATTGAATGGTGTATCGATCACGGCATCACGACCTTTGATCATGCG    150
                     ..||.|||||||||||.|||...||.||||||||.|||||.||.|||||.
RBAM_004380__    101 ATCTGATTGAATGGTGCATCAGCCAAGGCATCACCACCTTCGACCATGCC    150

BSNT_00726___    151 GATATTTATGGAGGCTATACGTGCGAAAAGCTGTTTGGAAACGCCCTTG-    199
                     |||||.||.||.||.||||||||.||||||||.||.||...|| |.||| 
RBAM_004380__    151 GATATATACGGCGGTTATACGTGTGAAAAGCTCTTCGGCGGCG-CTTTGT    199

BSNT_00726___    200 CCCTTTCGCCTGGATTAAGAGAAAACATAGAGCTGGTCACAAAATGCGGT    249
                     |||||||||||..|.||||.||..|.||.||..|.||||||||||||||.
RBAM_004380__    200 CCCTTTCGCCTTCAATAAGGGAGCAAATCGAAATCGTCACAAAATGCGGG    249

BSNT_00726___    250 ATCGTTCTTGAATCGCCTGAACGGCCCGCTCACAGATCGCATCATTATAA    299
                     ||.||..|||||||.||.||||||||||...|||..||||||||||||||
RBAM_004380__    250 ATTGTCATTGAATCACCGGAACGGCCCGGAAACAAGTCGCATCATTATAA    299

BSNT_00726___    300 CAC----AAGCAAATCGCATATTTTGGCATCCGTTGAGCAATCGCTTATG    345
                     .||    |||    ||.||.|||||.||.||.|..|||||.||||||.||
RBAM_004380__    300 TACGTCGAAG----TCTCACATTTTAGCGTCGGCGGAGCAGTCGCTTTTG    345

BSNT_00726___    346 AACCTTAGGACGGATTATATCGATGTGCTGTTGATTCACAGACCGGACCC    395
                     ||.||.|..||.||||||.|.||.||||||.|.|||||||||||||||||
RBAM_004380__    346 AATCTGAATACCGATTATCTGGACGTGCTGCTCATTCACAGACCGGACCC    395

BSNT_00726___    396 GCTCATGGATCCGGAGGGGGTAGCAGAGGCGTTTCAGGCCTTGAAATGCT    445
                     |||.|||||.|||||||..||.||.||.||||||||.||..|||||.|||
RBAM_004380__    396 GCTTATGGACCCGGAGGCTGTGGCTGAAGCGTTTCATGCGCTGAAAAGCT    445

BSNT_00726___    446 CTGGCAAGGTCAGGTACTTTGGCGTTTCAAATTTTAAAGATCACCAGTAT    495
                     |.||.||||||||.||.||.||.||.||.||.|||||||..||||||||.
RBAM_004380__    446 CGGGAAAGGTCAGATATTTCGGGGTGTCGAACTTTAAAGCGCACCAGTAC    495

BSNT_00726___    496 CGGATGCTGGAATCATATTTGCCTGAGAAGCTCGTAACCAACCAGATTGA    545
                     .|.|||||.|||||.||||||..|||...||||.|.||.|||||.|||||
RBAM_004380__    496 AGAATGCTCGAATCCTATTTGGATGATCCGCTCATCACAAACCAAATTGA    545

BSNT_00726___    546 GCTTTCCGCATACGAATTAGAAAATATGCTCGACGGCACTTTGAACCTCT    595
                     ..|.||.||.|||||..|.||||||||.|..||||||||..||.|..|||
RBAM_004380__    546 AATCTCGGCGTACGAGCTGGAAAATATTCATGACGGCACGCTGGATTTCT    595

BSNT_00726___    596 GTCAGGAAAAACGGATACCGCCGATGGCTTGGTCGCCTCTGGCAGGCGGC    645
                     |||||||||||||.||.|||||||||||.|||||.||..|.||.|||||.
RBAM_004380__    596 GTCAGGAAAAACGCATTCCGCCGATGGCGTGGTCACCGATTGCGGGCGGG    645

BSNT_00726___    646 AAAGTTTTCACTGGTGACA--CGGAAAAAGACCGGCGTGTCCGCACGGCG    693
                     |..||.||.||.|  ||||  |.||.||.|||...|||.||||..|.|||
RBAM_004380__    646 AGCGTCTTTACCG--GACAATCAGATAAGGACGTCCGTATCCGTGCCGCG    693

BSNT_00726___    694 CTTGAATCCGTTCAAGCAGAGATTGGCGCCGCTT-CATTGGACGAGGTGA    742
                     |||...|||||.||.|.|||.||.||.||||||| |||| |||||.||.|
RBAM_004380__    694 CTTCGTTCCGTACAGGAAGAAATCGGTGCCGCTTCCATT-GACGAAGTCA    742

BSNT_00726___    743 TGTACGCATGGCTGTATACGCATCCGGCCGACATCATGCCGATTGTCGGA    792
                     |||||||||||||||..||.||.|||||.||||||||||||||||||||.
RBAM_004380__    743 TGTACGCATGGCTGTTCACCCACCCGGCAGACATCATGCCGATTGTCGGC    792

BSNT_00726___    793 AGCGGAAAGCGCGAG---CGGATTTCCGCCGCGATAAATGCGTTGTCATA    839
                     ||||||||   .|||   ||.||||||||||||.|...|||.|...|.||
RBAM_004380__    793 AGCGGAAA---AGAGAACCGCATTTCCGCCGCGGTGCGTGCATCCGCGTA    839

BSNT_00726___    840 CAAGCTTGACCAGGATCAATGGTTCCGCATTTTTA-CAGCCGTACAGGGT    888
                     |||.||...|||.|||||.||||||||.||||.|| ||| .||.||.||.
RBAM_004380__    840 CAAACTCAGCCATGATCAGTGGTTCCGGATTTATACCAG-TGTCCAAGGC    888

BSNT_00726___    889 TACGATATTCCATAA    903
                     |.|||||||||||||
RBAM_004380__    889 TGCGATATTCCATAA    903


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00726 and RBAM_004380

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
