Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00725 and RBAM_004370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00725___pbpC.1.9828.seq
# -bsequence dna-align/RBAM_004370___pbpC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00725___pbpC-RBAM_004370___pbpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00725___pbpC-RBAM_004370___pbpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00725___pbpC
# 2: RBAM_004370___pbpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2055
# Identity: 1533/2055 (74.6%)
# Similarity: 1533/2055 (74.6%)
# Gaps: 99/2055 ( 4.8%)
# Score: 5506.5
#
#
#=======================================
BSNT_00725___ 1 ATGTTAAAAAAGTGTATTCTA-CTAGTATTTCTATGCGTCGGATTGATTG 49
||.|||||||.| ||.|| |||.||.||.||..||..|||.|.||.|
RBAM_004370__ 1 --GTGAAAAAAGGG--TTATACCTATTACTTTTACTCGCAGGAATCATAG 46
BSNT_00725___ 50 GGTTAATCGGATGCTCCAAAACAGATTCACCAGAGGATCGCATGGAAGCA 99
|.||.|||||.|||||.|||||.||.||..|.||.||..|.|||.|||..
RBAM_004370__ 47 GTTTGATCGGCTGCTCGAAAACGGAATCGGCCGAAGACAGAATGAAAGAT 96
BSNT_00725___ 100 TTCGTGAAACAGTGGAACGATCAG-CAATTCGATGACATGTATCAAAGCC 148
|||||.|||.|.||||||| .|.| ||.|.||||.|.|||||||||||||
RBAM_004370__ 97 TTCGTAAAAGACTGGAACG-GCGGTCATTACGATAAGATGTATCAAAGCC 145
BSNT_00725___ 149 TGACTAAAGATGTCAAAAAAGAAATC--TCCAAAAAAGATTTCGTCAACA 196
|.||..|.|||| ||||.|.|||.| ||||||||.|||||..|.||..
RBAM_004370__ 146 TCACCCAGGATG--AAAAGAAAAAACGATCCAAAAAGGATTTTATAAAGC 193
BSNT_00725___ 197 GGTATAAAGCCATCTATGAGCAGGCCGGCGTAAAAAATTTGAAAGTCACT 246
|.|||.||.||.|.|||||.||.||.||.||.||||||.|||||||||||
RBAM_004370__ 194 GATATGAAACCGTTTATGAACAAGCAGGGGTCAAAAATCTGAAAGTCACT 243
BSNT_00725___ 247 GCGGGAGAAGTAGATAAGGACGATCAAGACAACAAG----ACGATGA--- 289
||.|.|.|| .|||||| |||||.||||| |.|||||
RBAM_004370__ 244 GCCGAAAAA------CAGGACG---AAGACGACAAGAAAAAAGATGACCT 284
BSNT_00725___ 290 --AACATATCCCGTATAAAGTCAGCATGAACACAAATGCCGGCAAAGTCA 337
|.||.|||...|||||||||||||||.|.|||||.||.||.||.|||
RBAM_004370__ 285 CCAGCACATCGATTATAAAGTCAGCATGGATACAAAAGCAGGGAAGGTC- 333
BSNT_00725___ 338 GC--TTCAAGAATACTGCTGTGCTGAAATTAGAAAAAACAGATGACGAGG 385
|| ||.|| ||.||.||.||.||||||..||||||||||||.||.|..|
RBAM_004370__ 334 GCTTTTGAA-AACACGGCCGTCCTGAAAAAAGAAAAAACAGACGATGGAG 382
BSNT_00725___ 386 AGTCATGGAATATAGATTGGGACCCATCGTTTATTTTCAAGCAGCTGGCT 435
|.||||||||.||.||.|||.|.||.||.|||||||||||.|||||..|.
RBAM_004370__ 383 AATCATGGAACATCGACTGGAATCCTTCTTTTATTTTCAAACAGCTTTCC 432
BSNT_00725___ 436 GACGACAAAACCGTGCAAAT----TATGAGCATTGAACCGAAACGAGGCC 481
||.||||||||||||||.|| .|||| .||||||||.||.||.|
RBAM_004370__ 433 GATGACAAAACCGTGCAGATCGCAAATGA----AGAACCGAAGCGCGGAC 478
BSNT_00725___ 482 AAATTTACGATAAAAATGGAAAAGGCTTAGCCGTCAATACAGATGTTCCG 531
||||||||||.|||.|.||||||||..|.|||||.|||||.||.||.|||
RBAM_004370__ 479 AAATTTACGACAAAGACGGAAAAGGTCTCGCCGTGAATACCGAGGTGCCG 528
BSNT_00725___ 532 GAAATTGGAATTGTTCCCGGAGAGCTTGGCGATAAAAAAGAGAAAGTCAT 581
|||||.||.|||.|.||.|||.|.||.|||.|..|.|||||.|..||.||
RBAM_004370__ 529 GAAATCGGCATTATCCCTGGAAAACTCGGCAAGGATAAAGACAGCGTGAT 578
BSNT_00725___ 582 AAAAGAACTCGCCAAAAAACTTGA--TTTGACTGAAGACGACATCAAGAA 629
.|||.||||..|..|||||||.|| ||| ||||||||||.|||||.|.
RBAM_004370__ 579 CAAAAAACTGTCTGAAAAACTGGACCTTT--CTGAAGACGATATCAAAAG 626
BSNT_00725___ 630 AAAGCTGGATCAAGGCTGGGTAAAAGACGATTCGTTTGTGCCGC-TCAAA 678
.||.|||.|.||||||||||||||||||||.||.|.|||.|||| |||||
RBAM_004370__ 627 CAAACTGAACCAAGGCTGGGTAAAAGACGACTCCTATGTCCCGCTTCAAA 676
BSNT_00725___ 679 AAGGTCAAGCCTGACCAGGA----GAAATTAGTTTCTGAAGC---GACGT 721
|| .||| |||| ||| ||||..|...||..|||| ..||
RBAM_004370__ 677 AA-ATCA-----GACC-GGATGATGAAAGCAAGGTCAAAAGCCTGCTCG- 718
BSNT_00725___ 722 CATTACAAGGCGTAACAAGAACGAATGTCAGCTCCCGCTACTATCCGTAT 771
|||||.|.|||||.||.|.||||||.|||||||||||||||||||||||.
RBAM_004370__ 719 CATTAGACGGCGTGACGAAAACGAAAGTCAGCTCCCGCTACTATCCGTAC 768
BSNT_00725___ 772 GGCGAAAAGACAGCCCATTTGACAGGCTATGTCCGCGCCATTACAGCGGA 821
||||||||..|.||||||.||||.||.|||.|.....||||.||||||||
RBAM_004370__ 769 GGCGAAAAAGCGGCCCATCTGACCGGTTATATTAAAACCATCACAGCGGA 818
BSNT_00725___ 822 AGAACTGAAGAAAAAGAAAGAAGG--AACGTACAGCGATACGTCTAACAT 869
..|.|||||.|||..||||||.|| || |||||||||||.||.||.||
RBAM_004370__ 819 GCAGCTGAAAAAAGCGAAAGACGGCCAA--TACAGCGATACTTCCAAAAT 866
BSNT_00725___ 870 CGGTATCGCCGGACTTGAAAATGTGTATGAAGACAAGCTAAGAGGCACAA 919
|||.||||||||.|||||.|||||.||||||||||||||..|.|||||.|
RBAM_004370__ 867 CGGCATCGCCGGCCTTGAGAATGTATATGAAGACAAGCTGCGCGGCACGA 916
BSNT_00725___ 920 CTGGCTGGAAAATCTACGTGCCGCAAACCGGGGAAGTCATCGCTGAAAAG 969
|.|||||||||||.|||||.||||||||.||.||.|||||.|||||||||
RBAM_004370__ 917 CCGGCTGGAAAATTTACGTCCCGCAAACAGGTGAGGTCATTGCTGAAAAG 966
BSNT_00725___ 970 AAAGC--AAAGGACGGCGAGGATCTTCACCTCACAATTGATATCAAAACG 1017
||||| |||| |||..|||||.||||..|.||.|||||.||.||||||
RBAM_004370__ 967 AAAGCCGAAAG--CGGGCAGGATATTCATGTAACGATTGACATGAAAACG 1014
BSNT_00725___ 1018 CAAACGAAGCTGTATGATGAAC----TGAAGGATGACAGCGGGGCGGCAG 1063
||.||||||||||||| || ||||.|||||||||||.|||||||
RBAM_004370__ 1015 CAGACGAAGCTGTATG----ACTCTATGAAAGATGACAGCGGAGCGGCAG 1060
BSNT_00725___ 1064 TCGCGCTGCAGCCGAAGACAGGCGAAACACTCGCCCTTGTCAGCGCGCCT 1113
||||.||..|.|||.|.||.||.||.||||||||.||.||||||||.||.
RBAM_004370__ 1061 TCGCCCTCGAACCGCAAACGGGAGAGACACTCGCGCTAGTCAGCGCACCG 1110
BSNT_00725___ 1114 TCCTACGATCCAAACGGATTTATTTTCGGCTGGAGCGATAAGGAATGGAA 1163
||.||.||.||.|||||.||.||||||||||||||||..||.||||||||
RBAM_004370__ 1111 TCTTATGACCCGAACGGCTTCATTTTCGGCTGGAGCGGCAAAGAATGGAA 1160
BSNT_00725___ 1164 AAAGCTAAACAAAGATAAAAACAATCCGTTTTCAGCGAAATTCAATAAGA 1213
||||||.||..||||||||||||||||||||||||||||||||||.|| |
RBAM_004370__ 1161 AAAGCTGAATGAAGATAAAAACAATCCGTTTTCAGCGAAATTCAACAA-A 1209
BSNT_00725___ 1214 C-ATACGCGCCAGGTTCTACCATTAAACCGATTGCGGCTGCTATTGGAAT 1262
| .||.|||||.||.||.||.||||||||||||||.||.||..|.||..|
RBAM_004370__ 1210 CTTTATGCGCCGGGATCAACGATTAAACCGATTGCCGCGGCAGTCGGCCT 1259
BSNT_00725___ 1263 CAAAAACGGCACCCTTAAAGCCGATGAGAAGAAAACAATCAAAGGCAAGG 1312
.|.|||||||||..|.|||||....||.|||||||.|||||..||.||.|
RBAM_004370__ 1260 GACAAACGGCACATTGAAAGCGTCAGAAAAGAAAAAAATCACCGGAAAAG 1309
BSNT_00725___ 1313 AGTGGCAAAAAGATTCGAGCTGGGGCGGCTATTCA-GTGACACGTGTGTC 1361
|||||||.||||||||||||||||||||.|| .|| ||.|||||.||.||
RBAM_004370__ 1310 AGTGGCAGAAAGATTCGAGCTGGGGCGGTTA-CCATGTCACACGCGTATC 1358
BSNT_00725___ 1362 TGAGAGACTTCAACAAGTCGATTTGGAAAACGCCCTTATTACGTCAGACA 1411
.|||.|.||..|..||||.|||.|.||||||||.||.||.||.||.||||
RBAM_004370__ 1359 AGAGCGCCTGAATGAAGTGGATCTCGAAAACGCGCTGATCACATCGGACA 1408
BSNT_00725___ 1412 ATATTTATTTTGCCCAGAATGCGCTTGATATGGGAGCGGACACCTTCACA 1461
|.||.||.|||||.||.|||||..|.|||...|||||||||.|.||.|||
RBAM_004370__ 1409 ACATCTACTTTGCGCAAAATGCCATAGATGCCGGAGCGGACGCGTTTACA 1458
BSNT_00725___ 1462 AAAGGCTTGAAGACATTCGGTTTTTCAGAGGACGTTCCGTACGAATTCCC 1511
|||||.||.||.|||||.||.|||...||.||..||||||||.||||.||
RBAM_004370__ 1459 AAAGGATTAAAAACATTTGGCTTTGATGAAGAGATTCCGTACCAATTTCC 1508
BSNT_00725___ 1512 GATCCAGAAATCGTCTATTGCAAATGACAAGCTTGATTCAGACATTTTGC 1561
|||..|.||.||.||.||.||.||.|.||||||||||||.||.||..|.|
RBAM_004370__ 1509 GATTGAAAAGTCTTCAATCGCTAACGGCAAGCTTGATTCCGAGATCCTTC 1558
BSNT_00725___ 1562 TTGCGGATACAGGCTACGGACAAGGGCAAATGCAAATGTCTCCGCTTCAC 1611
|.|..|||||.||||||||.||.|||||.||||..|||||||||||.|||
RBAM_004370__ 1559 TCGGAGATACGGGCTACGGCCAGGGGCAGATGCTGATGTCTCCGCTGCAC 1608
BSNT_00725___ 1612 TTGGCAACTGCTTACACGCCATTTGTTGACA-ATGGAGACCTTGTCAAAC 1660
||.||..|||..||.||..|||||| |.||| |.|||.|.||.|||||||
RBAM_004370__ 1609 TTAGCGGCTGACTATACCGCATTTG-TAACAGACGGAAATCTCGTCAAAC 1657
BSNT_00725___ 1661 CGACGCTGATCAAAAA---AGATTCACAAACAGCTGATGTTTGGCACAAG 1707
||||..||||||||.| ||| |.|||||.|..|..|.|||||.|||
RBAM_004370__ 1658 CGACATTGATCAAAGACGGAGA---AAAAACACCGCAAATCTGGCATAAG 1704
BSNT_00725___ 1708 CAAGTGGTCACGAAGG--AAGGGGCGGCAGACATTACAAAAGGTCTGAAA 1755
||||||||..||||.| || .||.|.|||.||.||||||||.||||.|
RBAM_004370__ 1705 CAAGTGGTGTCGAAAGCCAA--TGCCGAAGAAATCACAAAAGGGCTGAGA 1752
BSNT_00725___ 1756 GGCGTTGTGGAAGATGAGCGCGGATCAGCGTATCAGCCTGTCGTAAAAGG 1805
|||||.||.||||||..||||||.||.||.||||||||.|.|||||..||
RBAM_004370__ 1753 GGCGTCGTTGAAGATCCGCGCGGCTCTGCATATCAGCCGGCCGTAAGCGG 1802
BSNT_00725___ 1806 AATCACAGTGGCCGGGAAAACAGGAACAGCCGAGCTGAAAACATCAAAAG 1855
.||.||.||.|||||.|||||.||.|||||||||||||||||.||.||||
RBAM_004370__ 1803 CATTACCGTAGCCGGAAAAACCGGTACAGCCGAGCTGAAAACGTCTAAAG 1852
BSNT_00725___ 1856 ATGATAAAGACGGCACGGAAAATGGCTGGTTTGTCGGCTACGATTACAAA 1905
|.|||||||||||||..|||||.||||||||||||||.||||||||.|||
RBAM_004370__ 1853 AAGATAAAGACGGCAAAGAAAACGGCTGGTTTGTCGGTTACGATTATAAA 1902
BSNT_00725___ 1906 AACAAAGACCTGCTTG-TCGCCATGATGATCCAAAATGTGCAGGACCGCG 1954
||.|||||||| .||| ||||.||||||||.|||.|.||..|..|.||||
RBAM_004370__ 1903 AAGAAAGACCT-TTTGATCGCGATGATGATTCAAGACGTCAAAAAACGCG 1951
BSNT_00725___ 1955 GCGGCAGCCACTATGTCGTTGAGAAAGCGAAAAAGCAATTTC--AATCGA 2002
||||.|||||.||.||||||||.||||||||||||||.|||| ||||
RBAM_004370__ 1952 GCGGAAGCCATTACGTCGTTGAAAAAGCGAAAAAGCAGTTTCAGAATC-- 1999
BSNT_00725___ 2003 ATTAA 2007
|||||
RBAM_004370__ 2000 ATTAA 2004
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