Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00709 and RBAM_004270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00709___ycsE.1.9828.seq
# -bsequence dna-align/RBAM_004270___ycsE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00709___ycsE-RBAM_004270___ycsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00709___ycsE-RBAM_004270___ycsE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00709___ycsE
# 2: RBAM_004270___ycsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 750
# Identity: 591/750 (78.8%)
# Similarity: 591/750 (78.8%)
# Gaps: 0/750 ( 0.0%)
# Score: 2319.0
#
#
#=======================================
BSNT_00709___ 1 ATGTCTGTTCAAAGAGAAGATGTAGATATCAAGCTGATCGCAATTGATAT 50
|||.|..|.|||||||||||.|.||||||.||.||||||||.||||||||
RBAM_004270__ 1 ATGCCGATACAAAGAGAAGACGCAGATATTAAACTGATCGCGATTGATAT 50
BSNT_00709___ 51 GGATGGTACACTGCTGAACGACGAGCAGCTGATCTCGGATGAAAACCGCA 100
|||.||.||.|||||.||.|||||||||||.|||.||||.||||||||..
RBAM_004270__ 51 GGACGGAACCCTGCTCAATGACGAGCAGCTCATCCCGGAGGAAAACCGGC 100
BSNT_00709___ 101 AAGCCATTCGTGAAGCGGAGGATAAAGGTGTGTATGTGGTGATCAGCACG 150
..||.||....||||||||||..|||||..|..|.||.||.||||||||.
RBAM_004270__ 101 GGGCGATCAAGGAAGCGGAGGCGAAAGGAATTCACGTCGTCATCAGCACA 150
BSNT_00709___ 151 GGCCGGACGCTGATGACGTGCCGGGAGCTGGCGGAATCGCTAAAGCTGTC 200
||.||.|||||||||||.|||||.||.|||||.||.||.||..|||||||
RBAM_004270__ 151 GGACGCACGCTGATGACCTGCCGCGAACTGGCTGAGTCTCTCGAGCTGTC 200
BSNT_00709___ 201 ATCCTTTCTAATCACGGCAAACGGCAGTGAAATTTGGGATTCGAATTTTA 250
|||||||.|||||||||||||||||||.|||||.||||||||..|.|||.
RBAM_004270__ 201 ATCCTTTTTAATCACGGCAAACGGCAGCGAAATCTGGGATTCCGACTTTG 250
BSNT_00709___ 251 ATTTGGTGGAACGGAAGCTGCTTCATACGGACCATATTCAAATGATGTGG 300
|..||||.||.||.|||||.||||||||.||.||||||||||...|.|||
RBAM_004270__ 251 AGCTGGTTGAGCGCAAGCTTCTTCATACCGATCATATTCAAAAATTATGG 300
BSNT_00709___ 301 GATTTGCGGAATAAGCACAACACTAATTTCTGGGCTTCTACGGTGAATAA 350
|||.||.||||||||||||||||.|||||||||||.|||||.||..|||.
RBAM_004270__ 301 GATCTGAGGAATAAGCACAACACGAATTTCTGGGCCTCTACCGTCGATAG 350
BSNT_00709___ 351 AGTATGGAGAGGCGAGTTTCCGGAAAACATTACGGATCATGAATGGCTCA 400
|||.||||||||.||.||.|||||||..||||||||||||.|.|||||||
RBAM_004270__ 351 AGTGTGGAGAGGAGAATTCCCGGAAACGATTACGGATCATCAGTGGCTCA 400
BSNT_00709___ 401 AATTCGGCTTTGACATTGAGGATGACGATATCCGAAACGAAGTGCTTCAG 450
|.|||||.||.||.||.|||||||||||..|.||.||.||.|||||..|.
RBAM_004270__ 401 AGTTCGGATTCGAAATCGAGGATGACGAAGTGCGGAATGAGGTGCTGAAA 450
BSNT_00709___ 451 GAGCTGAGAAAAAACAAAGAGCTCGAAATCACAAATTCAAGTCCGACAAA 500
|||||.|...||.||||.||||||||.||||||||.||.|||||||..||
RBAM_004270__ 451 GAGCTCAAGGAATACAAGGAGCTCGAGATCACAAACTCCAGTCCGATCAA 500
BSNT_00709___ 501 CATTGAAGTCAACGCGCTTGGCATCAACAAAGCTGCAGCCCTTGCCAAGG 550
|||.||||||||.||.||.||.|||||||||||.||.||.||.||.||||
RBAM_004270__ 501 CATCGAAGTCAATGCCCTCGGTATCAACAAAGCGGCTGCGCTGGCGAAGG 550
BSNT_00709___ 551 TTACGGAAAAACTCGGCATTACAATGGAGAATGTGATGGCGATGGGCGAC 600
|..||||||||||||||.|.||.|||||.|||||||||||.|||||.|||
RBAM_004270__ 551 TATCGGAAAAACTCGGCTTCACGATGGAAAATGTGATGGCCATGGGTGAC 600
BSNT_00709___ 601 AGCCTTAATGACATTGCGATGATCAAAGAAGCGGGTCTTGGCGTCGCAAT 650
||.||.|||||||||||.|||||..||.||||||||.|.||||||||.||
RBAM_004270__ 601 AGTCTGAATGACATTGCCATGATTGAAAAAGCGGGTGTCGGCGTCGCCAT 650
BSNT_00709___ 651 GGGCAATGCGCAAGACATCGTAAAAGAAACGGCTGATTATATCACGGATA 700
|||.||||||||.|||||.||.||||||||.|||||.|...|.||.|||.
RBAM_004270__ 651 GGGGAATGCGCAGGACATTGTGAAAGAAACAGCTGACTGGGTGACTGATG 700
BSNT_00709___ 701 CAAATATTGAGGATGGTGTCGCTAAAGCGATTCGCCATTGGGTACTATAA 750
..||.|..||..|.||.|||||.||||||||.|||||.|||||..|||||
RBAM_004270__ 701 TCAACACGGAAAACGGGGTCGCCAAAGCGATCCGCCACTGGGTGTTATAA 750
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