Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00696 and RBAM_004220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00696___ycnL.1.9828.seq
# -bsequence dna-align/RBAM_004220___ycnL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00696___ycnL-RBAM_004220___ycnL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00696___ycnL-RBAM_004220___ycnL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00696___ycnL
# 2: RBAM_004220___ycnL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity: 255/385 (66.2%)
# Similarity: 255/385 (66.2%)
# Gaps: 74/385 (19.2%)
# Score: 800.0
#
#
#=======================================
BSNT_00696___ 1 ATGAAAGAAAC-ACCATGCCCGAACTGCGGCAAACCTTTGACAGGCGATA 49
||||||||||| ||| |||||||||||||||||.||..|.||||||||.|
RBAM_004220__ 1 ATGAAAGAAACGACC-TGCCCGAACTGCGGCAAGCCGATTACAGGCGACA 49
BSNT_00696___ 50 TGGTCAGATCATCAAATG-TGCCTTGTCAATTTCGCTGCGGCCACTGCC- 97
||||||||||||| .||| |.||.||.||.||||..|||||.||.||||
RBAM_004220__ 50 TGGTCAGATCATC-CATGATCCCGTGCCAGTTTCAGTGCGGGCATTGCCA 98
BSNT_00696___ 98 -GGGAA----CGGCTTTATGAATATAAAGTTTCAGCTCCGATTAT-GCTG 141
|.||| || ||||||||||||.|||||||||||||| |||
RBAM_004220__ 99 TGTGAAATTGCG------TGAATATAAAGTATCAGCTCCGATTATGGCT- 141
BSNT_00696___ 142 GTATCATTAGCGGCCATCGTGC--------TGCTT---ATTTATCTTTT- 179
|||||||| ||| ||||| |||||||||.|
RBAM_004220__ 142 ---------GCGGCCAT--TGCGATTACGGTGCTTTTGATTTATCTTGTG 180
BSNT_00696___ 180 --GATGCTCC---TCCGCAATGCGGCAGGCTCAGTGCTGCCAGCTGTACA 224
|||| .|| .|||| ||.||.|| |..||.|.||.||.|..|.
RBAM_004220__ 181 CAGATG-GCCAGAACCGC----CGTCATGC-CGATGTTTCCGGCAGCGCG 224
BSNT_00696___ 225 GCACGTGCCGATGGCTGTATTTGCGCTTGTGTGCGCGTATCCCGTTTTTA 274
|.|.||||||...||..|.||.||.||.||.||.||||||||.||.||||
RBAM_004220__ 225 GTATGTGCCGGCCGCCATTTTCGCACTCGTATGTGCGTATCCGGTGTTTA 274
BSNT_00696___ 275 TTGTGAGTGAGCGGATGATTGCAAA----GTACGTGATTCAAAATGGCAA 320
||||.|||||||||.|.|||||.|| || |||.| |||||.|.||
RBAM_004220__ 275 TTGTCAGTGAGCGGCTCATTGCCAAACTCGT-CGTCA--CAAAAGGACA- 320
BSNT_00696___ 321 CATCATT-TATAGAGGAAAGAGAAAAGGCTCCTGA 354
|||| ||||.| |||||.|..||
RBAM_004220__ 321 ---CATTATATACA-GAAAGCGGTAA--------- 342
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