Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00692 and RBAM_004190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00692___ycnI.1.9828.seq
# -bsequence dna-align/RBAM_004190___ycnI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00692___ycnI-RBAM_004190___ycnI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00692___ycnI-RBAM_004190___ycnI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00692___ycnI
# 2: RBAM_004190___ycnI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 644
# Identity: 457/644 (71.0%)
# Similarity: 457/644 (71.0%)
# Gaps: 61/644 ( 9.5%)
# Score: 1570.0
#
#
#=======================================
BSNT_00692___ 1 TTGTTGAAAAAAATCGCATTGACACT-ATGTCCGGCTATTGTCGGCTCCC 49
.||||||||||||..||.||...|.| ||.||| |.||...|||
RBAM_004190__ 1 ATGTTGAAAAAAAAGGCTTTATTATTCATATCC-------GCCGTGACCC 43
BSNT_00692___ 50 TCTTATTC------TTTACGGCCCCTGCCAGCGCGCATGTTTCTGTAAAA 93
|.|.|.|| ||||||||..|.||.|||||.||.||.||.||.|||
RBAM_004190__ 44 TGTCACTCGTCGGTTTTACGGCGGCAGCAAGCGCCCACGTCTCAGTCAAA 93
BSNT_00692___ 94 CCGGCTGAGTCTGCTGCAGGCTCTTGGGAAACGTATACAATAAAGGTTCC 143
||.||.||.||.||.||.||.||||||||||||||.||.||.||.||.||
RBAM_004190__ 94 CCCGCGGAATCCGCGGCCGGTTCTTGGGAAACGTACACGATGAAAGTGCC 143
BSNT_00692___ 144 TTCAGAGAAAAATCTGCCGACAACGAAGGTTGTCCTCAAAATG-CCGAAG 192
|...||.||.|||..||||||||||||.||.||.||.|||||| |||..|
RBAM_004190__ 144 TGTGGAAAAGAATGAGCCGACAACGAAAGTCGTGCTGAAAATGCCCGCCG 193
BSNT_00692___ 193 GATGTTGAATTCCAGCAATATGAGCCAATTCCGGGCTGGAA------GGT 236
| .||||||||.|||||||||.||||.||||||||.||||| .||
RBAM_004190__ 194 G-CGTTGAATTTCAGCAATATCAGCCGATTCCGGGATGGAAAACATCCGT 242
BSNT_00692___ 237 TTCCACTCAAAAACATGATGACAAATCAGTGTCCGTGACATGGGAGGCGA 286
.||| |||||||||||||||.|.||.|||||.||.|||||.||.|
RBAM_004190__ 243 ATCC------AAACATGATGACAAAGCGGTCTCCGTCACTTGGGAAGCAA 286
BSNT_00692___ 287 CTGACGGAGGCATTCAGGAAGGACAGTTCCAGCAGTTTACCTTTGTTGCC 336
..|||||.|||||.|||...||.||.|||||||||||.||.||.|||||.
RBAM_004190__ 287 AGGACGGCGGCATCCAGCCCGGCCAATTCCAGCAGTTCACGTTCGTTGCG 336
BSNT_00692___ 337 AAAAACCCTGACAA-AGCGGAGGAAGCTGCTTGGGACGCATACCAATATT 385
|||||.|||||.|| |||||| ||.||.|||||||||||.||||||||||
RBAM_004190__ 337 AAAAATCCTGAAAAGAGCGGA-GATGCCGCTTGGGACGCTTACCAATATT 385
BSNT_00692___ 386 ACAAAGACGGCAGCATTGTTGAGTGGACAGGTGACGAGGATGCCGATACA 435
|||||||||||||||||||.||.|||||.|||||.|||.|.|||||.||.
RBAM_004190__ 386 ACAAAGACGGCAGCATTGTAGAATGGACGGGTGATGAGAAAGCCGACACG 435
BSNT_00692___ 436 CCTCATTCCATTACAAACATCACG---TCTGCAAAACA-AGTGACAGATG 481
||.||.||.|||||.||.|||||| ||.|| || .|||||.||||
RBAM_004190__ 436 CCCCACTCGATTACGAAAATCACGAAATCGGC----CAGCGTGACGGATG 481
BSNT_00692___ 482 AGCACGGGGC----CACGAAAACAGAAGACGATTCCGAA--AACTCAGGT 525
.||||||.|| ||...|||| ||||| || ||.||.||.
RBAM_004190__ 482 CGCACGGAGCTGAACAGTCAAAC-GAAGA--------AAGCAAATCCGGC 522
BSNT_00692___ 526 TCTTCAGCTCTAAACATTACAGCGATTGTGCTGTCTGCAGCTGCCATTAT 575
...|||||.||..|.|||.||||.||.||.|||||.||.||.||.|||||
RBAM_004190__ 523 GTATCAGCGCTTGATATTGCAGCCATCGTTCTGTCAGCTGCGGCGATTAT 572
BSNT_00692___ 576 --TTT--ATCTGTAGCAGCACTTGTTAAGAAAAAGCGTGCGTAA 615
||| ||| ||.||.|||||.||||||||.||.||||||
RBAM_004190__ 573 CCTTTCCATC----GCGGCGCTTGTAAAGAAAAAACGCGCGTAA 612
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