Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00689 and RBAM_004170
See
Amino acid alignment /
Visit
BSNT_00689 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00689___glcU.1.9828.seq
# -bsequence dna-align/RBAM_004170___glcU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00689___glcU-RBAM_004170___glcU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00689___glcU-RBAM_004170___glcU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00689___glcU
# 2: RBAM_004170___glcU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity: 662/875 (75.7%)
# Similarity: 662/875 (75.7%)
# Gaps: 22/875 ( 2.5%)
# Score: 2506.5
#
#
#=======================================
BSNT_00689___ 1 ATGGATTTATTATTGGCTCTTCTCCCGGCTTTGTTTTGGGGGAGCATTGT 50
||||||.|||||.|||||||||||||||||||.||||||||||||||.||
RBAM_004170__ 1 ATGGATATATTACTGGCTCTTCTCCCGGCTTTATTTTGGGGGAGCATCGT 50
BSNT_00689___ 51 TCTCTTCAATGTGAAATTAGGCGGCGGGCCGTACAGCCAGACACTGGGAA 100
..|.||.||.||.|||||||||||||||||.|||||||||||.|||||||
RBAM_004170__ 51 GTTATTTAACGTCAAATTAGGCGGCGGGCCTTACAGCCAGACGCTGGGAA 100
BSNT_00689___ 101 CGACGATCGGGGCACTCATTGTTTCTATCGTTATTTACTTTTTTGTTCAG 150
||||.||||||||.|||||.|||||..|.||..|.||..|.|||||.||.
RBAM_004170__ 101 CGACAATCGGGGCGCTCATCGTTTCGTTTGTGTTGTATCTGTTTGTCCAC 150
BSNT_00689___ 151 CCCGTTCTGTCACTTCGCATTTTTATTGTTGGAATCGTATCCGGCTTATT 200
||.||.|||||....||||||||||||||.||.|||.|.||.||..|.||
RBAM_004170__ 151 CCGGTGCTGTCTGGGCGCATTTTTATTGTCGGCATCATCTCGGGGCTGTT 200
BSNT_00689___ 201 TTGGTCACTTGGACAGGCCAACCAGCTGAAAAGCATTCAATTGATGGGCG 250
||||||.||.||.||...|||.|||||.||||||||.||..|||||||||
RBAM_004170__ 201 TTGGTCGCTCGGCCAAAGCAATCAGCTTAAAAGCATACAGCTGATGGGCG 250
BSNT_00689___ 251 TGTCGAAAACAATGCCGATTTCCACAGGAATGCAGCTCGTTTCCACCTCA 300
|.||.|||||.||||||||.||.||.||||||||||||||.||.||.||.
RBAM_004170__ 251 TTTCAAAAACGATGCCGATATCAACGGGAATGCAGCTCGTCTCGACTTCT 300
BSNT_00689___ 301 TTGTTCGGTGTGATCGTGTTCCGCGAATGGTCAACACCGATTGCGATTAC 350
|||||||||||||||||.|||...|||||||||||.|||||.||||||||
RBAM_004170__ 301 TTGTTCGGTGTGATCGTATTCAAAGAATGGTCAACCCCGATCGCGATTAC 350
BSNT_00689___ 351 GCTTGGCGTTCTCGCTTTGATCTTTATCATTGTGGGAATCATTCTCACGT 400
|||.||..|||||||..|.||.||||||||..|.||.||..|.|||||.|
RBAM_004170__ 351 GCTGGGTATTCTCGCCCTTATTTTTATCATCATCGGGATTGTGCTCACAT 400
BSNT_00689___ 401 CCTTGGAAGATAAGAATGATAAAAAAGAGGGC-----------GAGCCAA 439
|.||.|||||| |||||| |||| ||.||..
RBAM_004170__ 401 CTTTAGAAGAT----------AAAAAG-GGGCGGGCGGACGGAGAACCGG 439
BSNT_00689___ 440 GCAATTTGAAAAAGGGCATTTTGATTCTCCTTGTTTCGACTCTTGGTTAT 489
|.||.||.|||||.||||||.|.||.||.||..|.||.||.||.||||||
RBAM_004170__ 440 GAAACTTAAAAAAAGGCATTGTCATCCTGCTGATCTCCACGCTCGGTTAT 489
BSNT_00689___ 490 TTGGTTTATGTAGTCGTGGCTAGATTATTCAATGTGTCCGGCTGGTCCGC 539
|||||.|||||.||.|||||..|..|.|||...||.|||||.|||||.||
RBAM_004170__ 490 TTGGTCTATGTCGTTGTGGCCCGGCTGTTCGGCGTATCCGGATGGTCAGC 539
BSNT_00689___ 540 GCTGCTGCCACAGGCAATTGGCATGGTGGTCGGGGGGTTAGTTTTAACCT 589
|||.|||||.|||||.||.||.|||||..||||.||..|..|..|.||.|
RBAM_004170__ 540 GCTCCTGCCGCAGGCGATCGGGATGGTCATCGGCGGACTGCTCCTGACGT 589
BSNT_00689___ 590 ATAGACACAAACCCTTTAACAAGTATGCGATCAGAAATATTCTCCCAGGG 639
|.|..||.|||||.|||||.|||||.||..|||..||.|||||.||.||.
RBAM_004170__ 590 ACAAGCATAAACCGTTTAATAAGTACGCCCTCAAGAACATTCTGCCGGGA 639
BSNT_00689___ 640 TTAATCTGGGCAGGCGGAAATATGTTTTTGTTTATTTCTCAGCCGCGAGT 689
.|.||||||||...|||.|||||||||.||||.||.||.||||||||.||
RBAM_004170__ 640 ATCATCTGGGCGCTCGGGAATATGTTTCTGTTCATCTCACAGCCGCGCGT 689
BSNT_00689___ 690 CGGCGTTGCAACGAGCTTTTCCCTTTCACAAATGGGAATTGTCATTTCTA 739
|||.|||||.||.||.||||||||.||.||||||||.||.|||||....|
RBAM_004170__ 690 CGGAGTTGCGACAAGTTTTTCCCTCTCTCAAATGGGGATCGTCATCAGCA 739
BSNT_00689___ 740 CGCTCGGCGGTATTTTCATCCTGCGTGAAAAGAAAACGAAACGTCAGCTA 789
||||||||||.||.|||||.||.|||||.|..||||||||.||||||||.
RBAM_004170__ 740 CGCTCGGCGGAATCTTCATTCTCCGTGAGAGCAAAACGAAGCGTCAGCTG 789
BSNT_00689___ 790 ATAGCAATTGCGATCGGGATTATCCTGATTATTGCTGCCGCCGTATTCTT 839
.|.||.|||||.|||||||||||||||||.||||..|||||.||||||||
RBAM_004170__ 790 GTCGCCATTGCCATCGGGATTATCCTGATCATTGTGGCCGCGGTATTCTT 839
BSNT_00689___ 840 AGGAATCGCCAAAACAAATTCATAA 864
|||..|.||.|||.|||||||||||
RBAM_004170__ 840 AGGCGTTGCGAAATCAAATTCATAA 864
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.