Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00687 and RBAM_004160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:27
# Commandline: needle
# -asequence dna-align/BSNT_00687___gabD.1.9828.seq
# -bsequence dna-align/RBAM_004160___gabD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00687___gabD-RBAM_004160___gabD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00687___gabD-RBAM_004160___gabD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00687___gabD
# 2: RBAM_004160___gabD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1395
# Identity: 1140/1395 (81.7%)
# Similarity: 1140/1395 (81.7%)
# Gaps: 12/1395 ( 0.9%)
# Score: 4665.0
#
#
#=======================================
BSNT_00687___ 1 ATGCCAGATCAATTAACGGTCTACAACCCGGCTACGGGCGAGGAGATCAA 50
||||||||.||||||||.||.|||||||||||.|||||.||||.||||.|
RBAM_004160__ 1 ATGCCAGAACAATTAACAGTGTACAACCCGGCAACGGGAGAGGCGATCGA 50
BSNT_00687___ 51 AACGATTCCTCAGCAATCAGCCAAAGAAGTAGAAGAAGCCATTGAACGTT 100
||..||.||.|||||..|.|||.||||.||.|||.||||.||||||||||
RBAM_004160__ 51 AAGCATCCCCCAGCAGACGGCCGAAGATGTTGAAAAAGCGATTGAACGTT 100
BSNT_00687___ 101 CACATCAAGCGTTTAAAACGTGGTCTAAAACATCAGCGAACGAAAGAGCG 150
||||||||||||||.||.|.|||||.||||||||||||...|||.|.||.
RBAM_004160__ 101 CACATCAAGCGTTTCAATCATGGTCCAAAACATCAGCGGGAGAACGTGCC 150
BSNT_00687___ 151 TCTCTTTTGAAAAAATGGTATGAGCTGATTGTTGAACATAAAGAAGAACT 200
||.|||||||.|||||||||||||||||||||||||.|||||||||||||
RBAM_004160__ 151 TCACTTTTGAGAAAATGGTATGAGCTGATTGTTGAAAATAAAGAAGAACT 200
BSNT_00687___ 201 TGCAGATTTAATTACAAAGGAAAACGGAAAACCTTACCAGGAAGCAGTCG 250
|||.||.||||||||.||.||||||||.|||||.|||.|.|||||.||||
RBAM_004160__ 201 TGCGGAATTAATTACGAAAGAAAACGGCAAACCGTACGAAGAAGCGGTCG 250
BSNT_00687___ 251 GCGAGGTACTTTACGGTGCAGGCTATATTGAATGGTTCGCAGAAGAAGCG 300
|.||.||..|.|||||.||.||||||||||||||||||||.||||||||.
RBAM_004160__ 251 GAGAAGTTTTATACGGCGCCGGCTATATTGAATGGTTCGCCGAAGAAGCA 300
BSNT_00687___ 301 AAGCGTGTGTACGGAAGAACGGTCCCGGCCCCGACAACGGGTAAACGAAT 350
||.||..|.|||||.|||||.||.||.||.|||||||||||.|||||.||
RBAM_004160__ 301 AAACGGATTTACGGCAGAACAGTACCTGCGCCGACAACGGGCAAACGGAT 350
BSNT_00687___ 351 TGTTGTCACACGCCAGCCGGTCGGCCCCGTTGCAGCTATCACGCCCTGGA 400
|||.|||||.||.|||.|||||||.||.||.||.||.||||||||.||||
RBAM_004160__ 351 TGTCGTCACCCGTCAGGCGGTCGGTCCGGTAGCCGCGATCACGCCGTGGA 400
BSNT_00687___ 401 ATTTCCCGAATGCGATGATTACACGCAAAGCGGCGCCTGCTCTTGCCGCT 450
|||||||||||||||||||||||.|.|||||.|||||.|||.|.||.||.
RBAM_004160__ 401 ATTTCCCGAATGCGATGATTACAAGAAAAGCCGCGCCCGCTTTGGCGGCA 450
BSNT_00687___ 451 GGCTGTACATTTATCATCAAGCCGGCGCCGGACACACCGCTGTCTGCTTA 500
||||||||.||.||||||||.||||||..|||.||.|||||.||.|||||
RBAM_004160__ 451 GGCTGTACGTTCATCATCAAACCGGCGGAGGATACGCCGCTTTCCGCTTA 500
BSNT_00687___ 501 TGAACTAGCACGCCTCGCATATGAAGCGGGCATTCCGAAGGATGTTCTTC 550
.|..||.||.||.|||||||||||||||||.|||||||||||.||.||.|
RBAM_004160__ 501 CGCCCTTGCGCGTCTCGCATATGAAGCGGGAATTCCGAAGGACGTGCTGC 550
BSNT_00687___ 551 AGGTTGTAATCGGCGATGGAGAAGAAATCGGAAATGTGTTCACAAGCAGT 600
|.||.||.|||||.||.||||..|||||||||||.||.|||||.|||||.
RBAM_004160__ 551 AAGTGGTGATCGGTGACGGAGCCGAAATCGGAAACGTCTTCACCAGCAGC 600
BSNT_00687___ 601 CCGAAAATCCGCAAAATCACGTTCACAGGCTCAACACCTGTAGGGAAAAT 650
|||||||||||||||||.||.||.||.||||||||.|||||.||.|||||
RBAM_004160__ 601 CCGAAAATCCGCAAAATTACCTTTACCGGCTCAACGCCTGTCGGCAAAAT 650
BSNT_00687___ 651 CCTTATGAAAAACAGCGCGGACACCGTGAAGCACGTCTCAATGGAGCTCG 700
|||.||||||||||||||.||||||||.||.||..|.|||||||||||.|
RBAM_004160__ 651 CCTGATGAAAAACAGCGCCGACACCGTAAAACATATGTCAATGGAGCTTG 700
BSNT_00687___ 701 GCGGACACGCCCCGCTGATCGTAGATGAAGATGCAGACATTGACCTTGCC 750
|||||||.||.|||||||||||.||||||||.||.||..||||.||.||.
RBAM_004160__ 701 GCGGACATGCGCCGCTGATCGTGGATGAAGACGCTGATCTTGATCTGGCG 750
BSNT_00687___ 751 GTTG----AACAGGCGATGGCGTCCAAATACCGAAACGCCGGCCAAACCT 796
||.| |||| |||||.||.||||.|.||||.|||||||||||||
RBAM_004160__ 751 GTAGCCCAAACA----ATGGCCTCTAAATTCAGAAATGCCGGCCAAACCT 796
BSNT_00687___ 797 GCGTATGTGCCAACCGCCTGATCGTTCATGAATCCATCAAGGATGAATTT 846
||||.|||||.|||||.||||||||.||.||||||.|.||.||.||.|||
RBAM_004160__ 797 GCGTCTGTGCGAACCGGCTGATCGTACACGAATCCGTAAAAGACGAGTTT 846
BSNT_00687___ 847 GCTGCGAAACTGAGCGAGCAAG-TGTCTAAGCTGAGAGTCGGAAATGGAC 895
||....||||||||.||..||| || |.||.||.|.|||||||||.||.|
RBAM_004160__ 847 GCGAAAAAACTGAGTGAAGAAGCTG-CGAAACTCAAAGTCGGAAACGGTC 895
BSNT_00687___ 896 TTGAGGAAGGCGTCAATGTCGGACCGATCATCAATAAACGAGGCTTTGAA 945
||||..|||||||.||.|||||.||..|||||||.|||..||||||.||.
RBAM_004160__ 896 TTGAAAAAGGCGTAAACGTCGGCCCTGTCATCAACAAAAAAGGCTTCGAT 945
BSNT_00687___ 946 AAAATCGTCAGCCAAATAGATGATGCGGTTGAAAAAGGCGCGAAAGTGAT 995
|||||||||.|||||||..||||.||.||.|||||||||||.||||||.|
RBAM_004160__ 946 AAAATCGTCGGCCAAATTAATGACGCCGTGGAAAAAGGCGCAAAAGTGCT 995
BSNT_00687___ 996 TGCTGGGGGCACATATGACCGAAACGATGACAAAGGGTGCTACTTTGTGA 1045
..|.||.||.||.|||||||.|||||||||.|||||.|||||.||.||||
RBAM_004160__ 996 GACGGGCGGAACGTATGACCAAAACGATGAAAAAGGCTGCTATTTCGTGA 1045
BSNT_00687___ 1046 ATCCGACAGTGCTCACCGATGTCGATACGTCCATGAACATCATGCATGAG 1095
..|||||.|||||..|..||||.|||||.||||||||||||||||||||.
RBAM_004160__ 1046 CACCGACCGTGCTGTCAAATGTAGATACATCCATGAACATCATGCATGAA 1095
BSNT_00687___ 1096 GAAACATTCGGCCCGGTCGCCCCGATCGTCACGTTTTCTGATATTGATGA 1145
|||||||||||||||||.||.||||||||.|||||.||.|||||||||||
RBAM_004160__ 1096 GAAACATTCGGCCCGGTTGCGCCGATCGTTACGTTCTCAGATATTGATGA 1145
BSNT_00687___ 1146 AGCGATTCAGCTTGCCAACGATACACCGTATGG-CTTGGCTGCTTACTTC 1194
||||||..|||||||.||||||||.||||..|| ||| ||.|||||.|||
RBAM_004160__ 1146 AGCGATCAAGCTTGCGAACGATACGCCGTTCGGACTT-GCGGCTTATTTC 1194
BSNT_00687___ 1195 TTCACAGAAAACTACCGCCGCGGCATCTATATTTCCGAGAATCTAGAGTA 1244
|||||||||||||||||||||||||||||||||||.||..|.||.||.||
RBAM_004160__ 1195 TTCACAGAAAACTACCGCCGCGGCATCTATATTTCTGAACAGCTTGAATA 1244
BSNT_00687___ 1245 TGGCATTATCGGCTGGAATGACGGCGGACCGTCAGCGGTTCAAGCGCCAT 1294
.|||||.||||||||||||||||||||.|||||.||||||||||||||.|
RBAM_004160__ 1245 CGGCATCATCGGCTGGAATGACGGCGGTCCGTCCGCGGTTCAAGCGCCGT 1294
BSNT_00687___ 1295 TCGGCGGAATGAAAGAAAGCGGCATTGGCCGTGAAGGCGGTTCAGAAGGT 1344
||||.||||||||||||||||||||.|||||||||||||||.|.|||||.
RBAM_004160__ 1295 TCGGAGGAATGAAAGAAAGCGGCATCGGCCGTGAAGGCGGTACGGAAGGC 1344
BSNT_00687___ 1345 ATCGAGCCGTACCTTGAAACAAAATATTTGTCCATCGGTTTATAA 1389
||.||.||||||||.|||||.|||||..||||.|||||..|.|||
RBAM_004160__ 1345 ATTGAACCGTACCTGGAAACCAAATACATGTCTATCGGACTTTAA 1389
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