Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00682 and RBAM_004120

See Amino acid alignment / Visit BSNT_00682 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_00682___ycnE.1.9828.seq
#    -bsequence dna-align/RBAM_004120___ycnE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00682___ycnE-RBAM_004120___ycnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00682___ycnE-RBAM_004120___ycnE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00682___ycnE
# 2: RBAM_004120___ycnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 290
# Identity:     241/290 (83.1%)
# Similarity:   241/290 (83.1%)
# Gaps:           4/290 ( 1.4%)
# Score: 1004.0
# 
#
#=======================================

BSNT_00682___      1 ATGATCGTATTACAAGCTTACATCAAAGTAAAACCAGAAAAACGCGAGGA     50
                     ||||||||.|||||.||||||||.|||||||||.|.||.|||||||||||
RBAM_004120__      1 ATGATCGTCTTACAGGCTTACATGAAAGTAAAAGCGGATAAACGCGAGGA     50

BSNT_00682___     51 ATTTTTGAGCGAGGCTCAATCGCTTGTTCAGCATTCAAGAGCTGAGGAAG    100
                     ||||||..|.||.||.|||||.|||||||||||||||.|.||.||.||||
RBAM_004120__     51 ATTTTTAGGAGAAGCGCAATCACTTGTTCAGCATTCACGCGCGGAAGAAG    100

BSNT_00682___    101 GCAACGCGCAATACGACCTATTCGAAAAAGTAGGCGAAGAAAATACATTT    150
                     |.||.|.|||||||||.||.|||||||||||.||.||.|||||||||||.
RBAM_004120__    101 GAAATGTGCAATACGATCTTTTCGAAAAAGTCGGTGAGGAAAATACATTC    150

BSNT_00682___    151 GTCATGCTTGAAAAATGGAAAGATGAAGCGGCAATGAAATTCCATAACGA    200
                     ||||||||||||.|||||||||||||||..||.|||||||.|||.||||.
RBAM_004120__    151 GTCATGCTTGAACAATGGAAAGATGAAGAAGCGATGAAATCCCACAACGC    200

BSNT_00682___    201 AACTGCGCATTTCCAAGGGTTTGTCGCAAAAGGAAAAGAACTGCTGAGCG    250
                     |||||..|||||||||||.||.||.|||||||.|||||||.|||||||.|
RBAM_004120__    201 AACTGACCATTTCCAAGGATTCGTGGCAAAAGCAAAAGAAGTGCTGAGTG    250

BSNT_00682___    251 CCCCTCTTGATGTTGTCCGCACAGAGCTTAGT--GAGTAA    288
                     |.||.|||||.||.|||||||||||.||  ||  ||||||
RBAM_004120__    251 CGCCGCTTGACGTCGTCCGCACAGAACT--GTCAGAGTAA    288


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