Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00679 and RBAM_004090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_00679___ycnB.1.9828.seq
# -bsequence dna-align/RBAM_004090___ycnB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00679___ycnB-RBAM_004090___ycnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00679___ycnB-RBAM_004090___ycnB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00679___ycnB
# 2: RBAM_004090___ycnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1449
# Identity: 1109/1449 (76.5%)
# Similarity: 1109/1449 (76.5%)
# Gaps: 54/1449 ( 3.7%)
# Score: 4222.0
#
#
#=======================================
BSNT_00679___ 1 TTGAACACAAGTATTGAACAAAA----ACCTTTTAACCGTTCTGTCATTG 46
|||||.|..||||||| ||| |||.|..|||||.||||||||||
RBAM_004090__ 1 TTGAATAAGAGTATTG----AAACTGCACCATACAACCGCTCTGTCATTG 46
BSNT_00679___ 47 TCGGCATTTTGTTAGCCGGAGCGTTTGTGGCGATTTTGAACCAGACATTG 96
||||.|||.|.||.||.||||||||.||.||.|||||||||||||||.||
RBAM_004090__ 47 TCGGGATTCTTTTGGCGGGAGCGTTCGTCGCCATTTTGAACCAGACACTG 96
BSNT_00679___ 97 TTGATTACCGCACTTCCCCATATCATGAGGGATTTCAATGTCGATGCCAA 146
.|.||.||.||.||.||.||.||.||||..||.||||||.|.||.|||||
RBAM_004090__ 97 CTTATCACGGCGCTGCCGCACATTATGAATGACTTCAATATAGACGCCAA 146
BSNT_00679___ 147 CCAAGCACAATGGCTGACCACATCATTTATGTTAACCAATGGGATTTTAA 196
|.||||||||||||||||.|||||.||||||.|.||.||.||||||||.|
RBAM_004090__ 147 CAAAGCACAATGGCTGACAACATCGTTTATGCTGACGAACGGGATTTTGA 196
BSNT_00679___ 197 TTCCGATTACCGCGTTTTTAATTGAGAAATTCACAAGCCGGGCGCTGCTC 246
|||||||||||||.||||||||.|||||||||||.|||||..|.||..|.
RBAM_004090__ 197 TTCCGATTACCGCATTTTTAATAGAGAAATTCACGAGCCGCACCCTCTTG 246
BSNT_00679___ 247 ATCACAGCAATGAGCATTTTCACTGCCGGAACAGTCGTCGGAGCGTTCGC 296
||..|.||.|||||.||||||||.||.||.||..|.|||||.||.|||||
RBAM_004090__ 247 ATTTCCGCCATGAGTATTTTCACGGCGGGCACCATTGTCGGCGCATTCGC 296
BSNT_00679___ 297 GCCGAACTTCCCGGTTCTGCTGACAGCGCGTATCATTCAAGCGGCTGGAG 346
.|||||.||.|||||..||.|.||.||.||.||.||.||.||.||.||.|
RBAM_004090__ 297 CCCGAATTTTCCGGTATTGTTAACGGCCCGGATTATCCAGGCAGCCGGCG 346
BSNT_00679___ 347 CCGGCATTATGATGCCGCTCATGCAGACTGTATTCCTGACAATCTTTCCG 396
||||.||||||.||||.|||||||||||.|||||.||.||.||.||.|||
RBAM_004090__ 347 CCGGAATTATGCTGCCTCTCATGCAGACGGTATTTCTCACGATTTTCCCG 396
BSNT_00679___ 397 ATTGAAAAGCGCGGCCAGGCTATGGGTATGGTCGGATTGGTCATCTCATT 446
||.|||||||||||||..||.||||||||||||||.|||||.||.||.||
RBAM_004090__ 397 ATGGAAAAGCGCGGCCGCGCCATGGGTATGGTCGGCTTGGTTATTTCGTT 446
BSNT_00679___ 447 CGCGCCTGCGATCGGACCGACTCTTTCCGGATGGGCTGTCGAAGCTTTCT 496
||||||.||||||||.|||||.||||||||||||||.||||||||.||||
RBAM_004090__ 447 CGCGCCGGCGATCGGCCCGACGCTTTCCGGATGGGCGGTCGAAGCATTCT 496
BSNT_00679___ 497 CTTGGAGATCATTGTTTTATATTATTCTACCGTTTGCTGTGATTGATTTG 546
|||||.|.||.||||||||||||||..|.|||.|.||.||.||.||||||
RBAM_004090__ 497 CTTGGCGGTCTTTGTTTTATATTATCTTCCCGATCGCAGTCATCGATTTG 546
BSNT_00679___ 547 ATTCTTGCCAGCATCCTGATGAAAAACGTGACGACTTTAAGAAAAACACA 596
.||.|.||.|..||.||||||||||||||.|||||.|||.||.|||||||
RBAM_004090__ 547 CTTTTAGCGATTATTCTGATGAAAAACGTCACGACATTACGAGAAACACA 596
BSNT_00679___ 597 GATTGATATTTTATCAGTCATCCTTTCAACATTTGGGTTCGGCGGCCTTC 646
|||||||||||||||.||.|||.|.||.||..|.||.|||||||||||.|
RBAM_004090__ 597 GATTGATATTTTATCCGTGATCTTATCGACCCTCGGATTCGGCGGCCTGC 646
BSNT_00679___ 647 TGTACGGCTTCTCAAGCGTCGGCTCTTACGGCTGGTCCAGT--TCAACCG 694
|.||||||||||||||||.|||.||.|..||.|||.||||| |.|| |
RBAM_004090__ 647 TTTACGGCTTCTCAAGCGCCGGTTCATCAGGGTGGACCAGTGCTGAA--G 694
BSNT_00679___ 695 TCTTGATTTCACTGCTGGTGGGTGTCATCGCGCTGCTCTTGTTTATCACA 744
|..|||.|||.|||||.||.||.|...||||||||.|.||.||||||.||
RBAM_004090__ 695 TGCTGACTTCGCTGCTTGTCGGAGCGGTCGCGCTGATTTTCTTTATCGCA 744
BSNT_00679___ 745 AGACAAATGAAGCTTGAAAAACCGATGCTGGAATTCCGCGTCTTCACGTT 794
|||||.||||||||..|||||||||||||||||||||||||.||..|.||
RBAM_004090__ 745 AGACAGATGAAGCTCAAAAAACCGATGCTGGAATTCCGCGTGTTTTCTTT 794
BSNT_00679___ 795 TGGCGTTTTCAGCTTAACAACACTGCTGGGAACCCTCGTCTTTGCATTAT 844
.||..||||||||.|.||.||.|||||.|||||.||.||.||.||..|..
RBAM_004090__ 795 CGGGATTTTCAGCCTGACCACCCTGCTCGGAACGCTTGTTTTCGCGCTGC 844
BSNT_00679___ 845 TGATCGGTACGGAAACCATCCTGCCGCTTTATACACAAAATGTCAGAGAC 894
|||||||.|||||||||||.||.||||||||.||.|||||.|||.|.|.|
RBAM_004090__ 845 TGATCGGAACGGAAACCATTCTCCCGCTTTACACGCAAAAAGTCCGGGGC 894
BSNT_00679___ 895 GTCACAGCTTTTGATACAGGGCTTATGCTCCTTCCGGGAGCCGTTGTGAT 944
||..|.||.||||||||.||..|.|||||..|.|||||.||..|||||||
RBAM_004090__ 895 GTATCCGCGTTTGATACCGGATTAATGCTTTTGCCGGGCGCGATTGTGAT 944
BSNT_00679___ 945 GGGCTTTATGTCGCCGATTATCGGCAGAATTTTTGACCGTGTCGGCGGAA 994
|||..|.|||||.|||.||||||||.|..|.||||||....|||||||||
RBAM_004090__ 945 GGGGATGATGTCTCCGTTTATCGGCCGGGTGTTTGACAAAATCGGCGGAA 994
BSNT_00679___ 995 GAGGG-CTGGCGATTGCCGGTTTCTGCATCATCTTCCTGACATCTCTGCC 1043
|||| ||.|||||..||||.||||.|||||||.|.||.||.||.|||||
RBAM_004090__ 995 -AGGGCCTTGCGATGACCGGATTCTTCATCATCCTGCTCACGTCCCTGCC 1043
BSNT_00679___ 1044 GTTTATGCAGCTGACTGACCATACGTCACTCGCTTGGATTGTCGT--TTT 1091
|||||||.|.|||||.|||...|||||.|||..|||||||||||| |||
RBAM_004090__ 1044 GTTTATGAATCTGACGGACTCGACGTCTCTCATTTGGATTGTCGTCGTTT 1093
BSNT_00679___ 1092 ATACACCGTTCGTCTCTTAGGCACCGCCATGATCATGATGCCGGTGACAA 1141
|| ||||..||.||.||.||.||.||||||||.||||||||||||||.|
RBAM_004090__ 1094 AT--ACCGCGCGGCTTTTGGGAACAGCCATGATTATGATGCCGGTGACGA 1141
BSNT_00679___ 1142 CAGCCGGAATCAACGCGCTGCCGCGCCACTTGATTCCGCACGGAACTGCG 1191
||||.||.||||||||.||||||||||||||.|||||||||||.||.||.
RBAM_004090__ 1142 CAGCGGGTATCAACGCCCTGCCGCGCCACTTAATTCCGCACGGCACAGCC 1191
BSNT_00679___ 1192 ATGAACAACACGATTCGCCAAGTCGGCGGCTCGATCGGAACCGCACTATT 1241
||||||||.||..|.||||||||||||||.||.|||||.||.||.||..|
RBAM_004090__ 1192 ATGAACAATACCGTCCGCCAAGTCGGCGGTTCTATCGGTACGGCGCTGCT 1241
BSNT_00679___ 1242 GGTTTCCGTGATGAGCAACCAGGCCGCACATGCAGGCACGACAAATGTGA 1291
.||||||||||||||||.||||||||| ||||| ||||||.||
RBAM_004090__ 1242 AGTTTCCGTGATGAGCAGCCAGGCCGC--------GCACG-CAAATGCGA 1282
BSNT_00679___ 1292 -------AGC--ACGCTGCCCTGCACGGCATGAACGCCGCTTTTATTGTG 1332
.|| ||||.|||||||||||||||||.||.||.|||.|.||.
RBAM_004090__ 1283 CAACTCCGGCAAACGCCGCCCTGCACGGCATGAATGCGGCATTTGTCGTA 1332
BSNT_00679___ 1333 GCTGCCGTCATTGCACTTGTCGGCTTCCTTCTCTCATTCACATTAAAGAA 1382
||.|||..|||.||.||.|.|||||||||.||.||.||.|.|||.|||||
RBAM_004090__ 1333 GCCGCCTGCATCGCGCTGGCCGGCTTCCTCCTATCTTTTATATTGAAGAA 1382
BSNT_00679___ 1383 A------CCTCAGCGCCCTGCCGAACAGCAGCCGGC----ACGC--TAA 1419
| |.||||| ||||.|||||||.||| |||| |||
RBAM_004090__ 1383 AAAACCGCGTCAGC------CCGAGCAGCAGCAGGCCGTTACGCGGTAA 1425
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