Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00668 and RBAM_004010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00668___rapC.1.9828.seq
# -bsequence dna-align/RBAM_004010___rapC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00668___rapC-RBAM_004010___rapC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00668___rapC-RBAM_004010___rapC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00668___rapC
# 2: RBAM_004010___rapC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1161
# Identity: 910/1161 (78.4%)
# Similarity: 910/1161 (78.4%)
# Gaps: 24/1161 ( 2.1%)
# Score: 3516.0
#
#
#=======================================
BSNT_00668___ 1 ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGA 50
||||||||||||.||||||||||||||||.|||||.||.|||||||||||
RBAM_004010__ 1 ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGA 50
BSNT_00668___ 51 GTGGTACAGATATATCCGGACATTCAGCGTGCCGGATGCCGAAGTGTTAA 100
||||||..||||.|||.|.||||||||||||||||||||.||..|.||.|
RBAM_004010__ 51 GTGGTATCGATACATCAGAACATTCAGCGTGCCGGATGCGGAGATCTTGA 100
BSNT_00668___ 101 AAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTG 150
|.||.||.|||.|.||.||.||..|.||.|||.|||.||||||.|||||.
RBAM_004010__ 101 AGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTA 150
BSNT_00668___ 151 CTGCTTTATTATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTA 200
.|||||||||||||.||.||||||||.||.||.|||||.||||||||.||
RBAM_004010__ 151 GTGCTTTATTATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTA 200
BSNT_00668___ 201 TCTT-GAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCAAGCCTGTCT 249
||| ||||||.|.||.|||.|.||.||.|||||||||||.|.||||||.
RBAM_004010__ 201 -CTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCGACCCTGTCG 249
BSNT_00668___ 250 GAATTATCAAGA-AACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGC 298
|||.| ||..|| ||||||||.|.||.||||||.|..|||||||||||.|
RBAM_004010__ 250 GAAAT-TCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTC 298
BSNT_00668___ 299 TCGACTATTACGTGAATTTTTTTCGCGGGATGTATGAATTTGATAAGCGG 348
||||.||||||||.||.|||||....||.||||.||||||||||||..|.
RBAM_004010__ 299 TCGATTATTACGTCAACTTTTTCAAAGGCATGTTTGAATTTGATAAAAGA 348
BSNT_00668___ 349 GAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTC 398
||||||||.||.||.||||||||.||||||||.||.||||||||.||..|
RBAM_004010__ 349 GAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGC 398
BSNT_00668___ 399 CTTTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGG 448
|||.||..|.|||||..|.||||||||.||.||||||||||||.|.||.|
RBAM_004010__ 399 CTTCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCG 448
BSNT_00668___ 449 AAGCTTATTATTATATGAAGCAAACGTATTTTTCATTGATTAATATAAAA 498
|||||||||||.|||||||.||||||||||||||.|||||..||||||||
RBAM_004010__ 449 AAGCTTATTATCATATGAAACAAACGTATTTTTCTTTGATACATATAAAA 498
BSNT_00668___ 499 AACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCAT 548
|||||.||||||||||||||.||||||||.||.|||||.||..|.|||||
RBAM_004010__ 499 AACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCAT 548
BSNT_00668___ 549 TCAGTGCCATTTCGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCG 598
|||.||||||||.||.|||||.|||||..|.|||||||||||....||.|
RBAM_004010__ 549 TCAATGCCATTTTGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTG 598
BSNT_00668___ 599 AACAAGCCGCACGCCATTT----CAAATTGGCGCT---CAACATGGCCCA 641
||||.||.||....||||| || |||| ||| ||||||.|
RBAM_004010__ 599 AACAGGCGGCCAAACATTTTCAGCA------CGCTCTGCAA-ATGGCCGA 641
BSNT_00668___ 642 AGCGGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGAT 691
|...|||||||||||.|||||.||.||.||.||..|.||.||.||||||.
RBAM_004010__ 642 AAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCAGTATAACCTCGGAC 691
BSNT_00668___ 692 TATGCTATTACAATCAAGACCTTCTAGACCCTGCCATTGATTACTTTGAA 741
|.|||||.||||||||.||||...|.|.|...||.|||...|||||||||
RBAM_004010__ 692 TGTGCTACTACAATCAGGACCGCATCGGCGAAGCGATTCCGTACTTTGAA 741
BSNT_00668___ 742 AAAGCGGTCTCCACATTTGAA--AGCAGCAGGATCGTCAATTCTCTCCCG 789
...||||||...||||||||| |..| ||.||||||||||||||.||.
RBAM_004010__ 742 CGGGCGGTCGATACATTTGAATCACAA--AGAATCGTCAATTCTCTTCCT 789
BSNT_00668___ 790 CAAGCCTATTTTTTAATCACCCTGATTTATTATAAACAGGGAAAACATGA 839
|||||.||||||.|||||||.||.|||||.|.|||||..||||||.|.||
RBAM_004010__ 790 CAAGCATATTTTCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGA 839
BSNT_00668___ 840 TAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTAAAGAAACAG 889
.|||||.||||||||||||||||||||.||||||||||||||||||||||
RBAM_004010__ 840 AAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTAAAGAAACAG 889
BSNT_00668___ 890 ACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAG 939
|||||.|.|..||..|.|||||||||||.|...||||..|.||.||||||
RBAM_004010__ 890 ACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAG 939
BSNT_00668___ 940 GATCAGCCCAATGAAGAAGGAATCGAACG-ATGTTTCCAATACTTAAAAA 988
|...|.||..||||.|||..|||| |.|| .|||||||..|||.|..||.
RBAM_004010__ 940 GCGAAACCGGATGAGGAAACAATC-AGCGCGTGTTTCCGTTACCTGGAAG 988
BSNT_00668___ 989 ATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAA 1038
||||||||.|.|||||.|||||||||||||||||.|||||||.|||.|||
RBAM_004010__ 989 ATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAA 1038
BSNT_00668___ 1039 TATTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACA 1088
||||||||||||||.||.||.||||||.|.|||.||..|||.|||||..|
RBAM_004010__ 1039 TATTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAA 1088
BSNT_00668___ 1089 AGTTGAAGAGGCAAGAAAACAAATACAAAGGAGTGAAGGTTTGTATGAAA 1138
|||.|||||||||||.||||||||||||||||||||.|||||||||||||
RBAM_004010__ 1089 AGTCGAAGAGGCAAGGAAACAAATACAAAGGAGTGAGGGTTTGTATGAAA 1138
BSNT_00668___ 1139 TTGAAATCTAA 1149
|||||||||||
RBAM_004010__ 1139 TTGAAATCTAA 1149
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