Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00667 and RBAM_004000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00667___yclK.1.9828.seq
# -bsequence dna-align/RBAM_004000___yclK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00667___yclK-RBAM_004000___yclK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00667___yclK-RBAM_004000___yclK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00667___yclK
# 2: RBAM_004000___yclK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity: 1092/1461 (74.7%)
# Similarity: 1092/1461 (74.7%)
# Gaps: 72/1461 ( 4.9%)
# Score: 3992.0
#
#
#=======================================
BSNT_00667___ 1 ATGAAGATTAAATATTTATATCAGCTGCTGCTTAGCCATATCAGCATTTT 50
||||.|||||||||.|||||||||||||||.|.||.|||.||||||||||
RBAM_004000__ 1 ATGAGGATTAAATACTTATATCAGCTGCTGTTAAGTCATGTCAGCATTTT 50
BSNT_00667___ 51 GATTTTAGCGTTTGTCATTATCATTTCTCTGTTTTCCCACTTTGTGAAAG 100
||||||.||.|||.||||.||||||||.||||||||.|||||||||||||
RBAM_004000__ 51 GATTTTGGCCTTTTTCATCATCATTTCCCTGTTTTCGCACTTTGTGAAAG 100
BSNT_00667___ 101 AATTTGCCTATCAAAACAAAGTAGAGGAATTGACGTCATATGCGGTGCAG 150
|.|||||.||||||||.|||||.||.||..||.|.||.||.|||..||||
RBAM_004000__ 101 ATTTTGCGTATCAAAATAAAGTGGATGAGCTGTCTTCTTACGCGCAGCAG 150
BSNT_00667___ 151 ATCGCAAATGAATTCCAAGC----CGGCC---AGGTGGACATGCGCAGGC 193
|||.|||.|| ||| ||||| |..|.||..|||||.|.|
RBAM_004000__ 151 ATCACAAGTG-------AGCTGAACGGCCGCGATCTTGATCTGCGCCGCC 193
BSNT_00667___ 194 TTTATCCTTATCAGGACATGTTAAGCACAAGAAAGACGCA-GTTTATCAT 242
|.|||||.||||||||||||||||..||..|..|||| || ||||||.||
RBAM_004000__ 194 TGTATCCGTATCAGGACATGTTAAAAACGCGCGAGAC-CAGGTTTATTAT 242
BSNT_00667___ 243 CTTTAATGAAGAGCAGCAGCCTTATTTTCTTCCTGAAGGCTTTCATCACC 292
.||..|||||.|.||||.||||||.|||.|||||||.| ||...|
RBAM_004000__ 243 TTTCGATGAACATCAGCGGCCTTACTTTTTTCCTGACG------ATATGC 286
BSNT_00667___ 293 CACCAAGGGAACAGCTG--AAGAAATCAGAATGGAATAAGCTAAAAAAAG 340
|.||..|.||..||||| |||.|| |||.|||.|.|.|||.||..|||
RBAM_004000__ 287 CGCCGCGCGAGAAGCTGAAAAGTAA--AGAGTGGCACATGCTGAAGCAAG 334
BSNT_00667___ 341 GGCAGACTG-TCATGATCAGGGC--AGATG-GCCGTTTTGAT---GA--- 380
||.|.||.| ||| ||||||.|| ||||| .|||||||.|| ||
RBAM_004000__ 335 GGAAAACCGTTCA-GATCAGAGCGGAGATGAACCGTTTTAATACGGAAGG 383
BSNT_00667___ 381 ---TGAAGTGTCACTTGTGGCGCAGCCTATATTTGTTCAGAACG---AAT 424
.|||||.||.|||||.||..|.||..|.|||.| .|||| |||
RBAM_004000__ 384 CTTGGAAGTATCGCTTGTCGCAAAACCGCTTTTTAT---CAACGATCAAT 430
BSNT_00667___ 425 TTAAAGGCGCCGTTCTGCTGATTTCTCCGATCAGCGGTGTTGAACAGATG 474
||||||||||.||.|||||..|.|||||..||||.||.||.||.||||||
RBAM_004000__ 431 TTAAAGGCGCGGTGCTGCTCGTGTCTCCCGTCAGAGGGGTCGAGCAGATG 480
BSNT_00667___ 475 GTCAATCAGGTCAACCTCTATATGTTTTACGCTGTGATCAGCACGCTTGT 524
.|||..||||||||||.|||||||.|||||||..|.||||||||.|||.|
RBAM_004000__ 481 ATCAGCCAGGTCAACCGCTATATGATTTACGCGATCATCAGCACCCTTAT 530
BSNT_00667___ 525 GATTACGATTCTCGTGAGCTGGCTTCTGTCCAAATTCCATGTCAAGCGGA 574
.||.||||||||..|||||||||||.|.||.|||||.||.||||||||||
RBAM_004000__ 531 CATCACGATTCTGCTGAGCTGGCTTTTATCTAAATTTCACGTCAAGCGGA 580
BSNT_00667___ 575 TTCAAAAGCTGAGAGAAGCGACAGATAAAGTGGCTTCCGGCGATTATGAC 624
||||.|...||.|.||.|||||.|..||||||||.|||||.|||||.||
RBAM_004000__ 581 TTCAGACATTGCGGGATGCGACCGGAAAAGTGGCATCCGGTGATTACGA- 629
BSNT_00667___ 625 ATCCATTTGG----AAAACAGCTACGGAGACGAAATCGGCGTTCTGGCGT 670
.||||.| |.||||||..|||.||.|||||||||.|.|||||||
RBAM_004000__ 630 ---TATTTCGCTCAAGAACAGCGGCGGCGATGAAATCGGCATGCTGGCGT 676
BSNT_00667___ 671 CTGACTTTAATATCATGGCGAAAAAACTAAAGCAGTCAAGGGATGAAATC 720
|.||.||.||.|.||||||.|||||.||.|||||.||.||.||..|.||.
RBAM_004000__ 677 CCGATTTCAACACCATGGCCAAAAATCTGAAGCAATCGAGAGAGCAGATT 726
BSNT_00667___ 721 GAGCGCCTTGAGAAGCGGAGAAGGCAGTTTATTGCTGATGTGTCACATGA 770
||.|||||.||.||.|||||..|.||.|||||.||.|||||.||.|||||
RBAM_004000__ 727 GACCGCCTCGAAAAACGGAGGCGCCAATTTATCGCCGATGTCTCCCATGA 776
BSNT_00667___ 771 ATTAAAAACACCGCTGACGACGATCAACGGTTTGGTTGAAGGGTTGAACA 820
..|.|.|||.||..|||||||.||.|||||..|.||.||.|||.|.||||
RBAM_004000__ 777 GCTGAGAACGCCTTTGACGACCATTAACGGACTTGTGGAGGGGCTTAACA 826
BSNT_00667___ 821 GCCATACGATTCCTGAGGATAAA---AAGGATAAATGCTTCTCGCTGATC 867
||.|.||.||.|| |||.||| ||.||.||||||||||||||||||
RBAM_004000__ 827 GCAACACCATCCC---GGAAAAAGATAAAGAGAAATGCTTCTCGCTGATC 873
BSNT_00667___ 868 AGTGAGGAAACGAAGCGCATGCTGCGGCTCGTAAAAGAAAATCTGGATTA 917
||.||.|||||||||||.|||||..|||||||.||||||||.||||||||
RBAM_004000__ 874 AGCGAAGAAACGAAGCGGATGCTCAGGCTCGTGAAAGAAAACCTGGATTA 923
BSNT_00667___ 918 TGAAAAAATCAGATCCCAGCAAATTACCTTGAACAAGCT-AGACGTTCCT 966
||||||||||||||||||||||||.|...||.||||||| ||.| |.||.
RBAM_004000__ 924 TGAAAAAATCAGATCCCAGCAAATCAAACTGGACAAGCTCAGTC-TGCCG 972
BSNT_00667___ 967 CTGATCGAGGTGTTTGAAATCGTGAAAGAGCACTTGCAGCAGCAGGCGGA 1016
||.|||||||||||||||||..|.||||||||..|..|.|||||||||||
RBAM_004000__ 973 CTCATCGAGGTGTTTGAAATTATTAAAGAGCATCTCAATCAGCAGGCGGA 1022
BSNT_00667___ 1017 AGAAAAACAAAACAAGCTGATGATACAAGTAGAGGATCACGTCATCGTAC 1066
.|||||||||||..|||||..|||.|||||.|||||...|||||..||..
RBAM_004000__ 1023 GGAAAAACAAAATCAGCTGCGGATTCAAGTGGAGGACGGCGTCAAAGTGT 1072
BSNT_00667___ 1067 ATGCCGATTATGACCGGTTCATTCAAATTCTCGTCAACATTACGAAAAAC 1116
..||||||||||||.||.|.||.||.||||||||||||||.|||||||||
RBAM_004000__ 1073 TCGCCGATTATGACAGGCTGATCCAGATTCTCGTCAACATCACGAAAAAC 1122
BSNT_00667___ 1117 AGCATCCAATTTACGCAAAACGGTGACATTTGGCTGCGC-GGAATGGAAG 1165
|||||.||||||||||||||.||.|||||...||||||| ||.|| ||||
RBAM_004000__ 1123 AGCATTCAATTTACGCAAAAGGGAGACATCACGCTGCGCGGGTAT-GAAG 1171
BSNT_00667___ 1166 GTTATAAAGAGACGATTATTGAAATTGAAGACACGGGTATCGGCAT-TCC 1214
|.||||||||.|||.|.||||||||.||||||||.||.|||||||| |||
RBAM_004000__ 1172 GCTATAAAGAAACGGTGATTGAAATCGAAGACACCGGGATCGGCATCTCC 1221
BSNT_00667___ 1215 AAAAGAGGATATTGAGCATATTTGGGAGCGATTCTATAAAGCAGATATTT 1264
||||||||.|||||.|||||.||||||||.||.|||||.||.||..|.|
RBAM_004000__ 1222 -AAAGAGGAAATTGAACATATATGGGAGCGGTTTTATAAGGCGGACGTGT 1270
BSNT_00667___ 1265 CAAGAACGAACACAGCATACGGTGAATACGGACTCGGTCTCTCGATCGTC 1314
|..|.|||||.||.||||||||.||||||||||||||.||.||.||||||
RBAM_004000__ 1271 CCCGGACGAATACGGCATACGGCGAATACGGACTCGGCCTTTCCATCGTC 1320
BSNT_00667___ 1315 AGGCAGCTCGTTGAAATGCACCAGGGCACAGTAGAAATCAAGAGTGAAGA 1364
|||||||||||.|||||||||.||||.||..||||.||..|.||.|||.|
RBAM_004000__ 1321 AGGCAGCTCGTCGAAATGCACAAGGGTACGATAGATATTGACAGCGAAAA 1370
BSNT_00667___ 1365 AGGGAAAGGCACAAAGTTCATCATCCGCCTTCCTTTAACGGCAAAACAGC 1414
|||.||||||||.|..||.|..|||||||||||..|.|...|.|||||..
RBAM_004000__ 1371 AGGAAAAGGCACGACCTTTACAATCCGCCTTCCGCTGAATACGAAACATG 1420
BSNT_00667___ 1415 AATAG------ 1419
|||..
RBAM_004000__ 1421 AATCATCTTGA 1431
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