Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00666 and RBAM_003990
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00666.1.9828.seq
# -bsequence dna-align/RBAM_003990___yclJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00666-RBAM_003990___yclJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00666-RBAM_003990___yclJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00666
# 2: RBAM_003990___yclJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity: 562/880 (63.9%)
# Similarity: 562/880 (63.9%)
# Gaps: 206/880 (23.4%)
# Score: 2323.5
#
#
#=======================================
BSNT_00666 1 ATGGATAAGACCGCCTCTGGGGCGCGTCCCCTTGCTGATAAATTAATTGT 50
RBAM_003990__ 0 -------------------------------------------------- 0
BSNT_00666 51 AGTCCAAAGGTATGAAAAAAATATGAATAATCTATTTCTAGTTGATGAAA 100
RBAM_003990__ 0 -------------------------------------------------- 0
BSNT_00666 101 TAAAAACTAACAATTGTGAAACGCAAAACCTTCTGTTTAAAATGGTGCTA 150
RBAM_003990__ 0 -------------------------------------------------- 0
BSNT_00666 151 TTATATAAAAAAGCATCAAAACAACCGGAGGATATAATGAAAATATTAAT 200
|||||.||||||||
RBAM_003990__ 1 ------------------------------------ATGAAGATATTAAT 14
BSNT_00666 201 GATAGAAGATAATGTTAGTGTATGTACGATGACGGAGATGTTCTTTTTTA 250
|||||||||||||.|.||.|||||.||.||||||||.|||||||||||||
RBAM_003990__ 15 GATAGAAGATAATATAAGCGTATGCACCATGACGGAAATGTTCTTTTTTA 64
BSNT_00666 251 AAGAAGGTTTTGAAGCGGAATTCGTTCATGACGGGTTAGAAGGGTACCAG 300
|||||||.||||||||.|||||.||.||||||||..|.|||||.||.|||
RBAM_003990__ 65 AAGAAGGATTTGAAGCCGAATTTGTCCATGACGGAGTGGAAGGCTATCAG 114
BSNT_00666 301 CGTTTTACGGAAGAAAATTGGGATCTGATCATTTTGGATATCATGCTTCC 350
|||||.||||||||..|.||||||.||.|||||.||||.||.||||||||
RBAM_003990__ 115 CGTTTCACGGAAGAGGACTGGGATTTGGTCATTCTGGACATTATGCTTCC 164
BSNT_00666 351 ATCTATGGACGGCGTGACCATCTGCAGAAAAATAAGAGAGACAAGCACGG 400
|||.||||||||.|||||.||||||.|.||||||||||||||.||||..|
RBAM_003990__ 165 ATCAATGGACGGAGTGACGATCTGCCGGAAAATAAGAGAGACGAGCAGTG 214
BSNT_00666 401 TGCCGATTATCATGCTGACTGCCAAAGACACTGAATCAGATCAGGTCATC 450
||||||||||.||||||||.||.||.||.||.||.||.||||||||.|||
RBAM_003990__ 215 TGCCGATTATTATGCTGACCGCAAAGGATACGGAGTCTGATCAGGTGATC 264
BSNT_00666 451 GGCTTTGAGATGGGGGCGGACGATTATGTCACAAAGCCGTTCAGTCCGCT 500
||.|||||.||||||||||||||.||||||||.|||||||||||.|||||
RBAM_003990__ 265 GGGTTTGAAATGGGGGCGGACGACTATGTCACCAAGCCGTTCAGCCCGCT 314
BSNT_00666 501 GACATTGGTTGCCCGCATCAAAGCCGTCATCAGAAGATACAAGGCGA--- 547
|||..|.||.||.||.||.|||||.||.||||||||||||..|||||
RBAM_003990__ 315 GACGCTAGTAGCGCGGATTAAAGCGGTGATCAGAAGATACCGGGCGACGG 364
BSNT_00666 548 --CAGGC-----AAAGCGGTTATTGATGAAGATATGATCGAAACGGAATG 590
||||| ||||| ||.||..||||||||||||..||
RBAM_003990__ 365 GGCAGGCCGTAAAAAGC----------GACGACTTGATCGAAACGGCGTG 404
BSNT_00666 591 CTTTACCATCAATAAGAAGACGAGAGAAGTATTATTAAACGGAGAGCCTG 640
.|||.|.|||||||||||||||.|.|||||.||..|..|||||.|.||||
RBAM_003990__ 405 TTTTTCAATCAATAAGAAGACGCGGGAAGTGTTTCTGCACGGAAAACCTG 454
BSNT_00666 641 TAGAAAATCTCACGCCGAAGGAATTCGATCTGCTTTATTACCTTGTCCAA 690
|.||.|||||.|||||||||||||||||||||||.|.|||.||.|..|||
RBAM_003990__ 455 TCGAGAATCTGACGCCGAAGGAATTCGATCTGCTCTTTTATCTCGCACAA 504
BSNT_00666 691 AATCCGCGGCAGGTGTTCTCCAGAGAACAGCTGCTTGAGCAGGTATGGGG 740
||.|||||.|||||.||.||.|||||.|||||||||||||||||||||||
RBAM_003990__ 505 AACCCGCGCCAGGTTTTTTCGAGAGAGCAGCTGCTTGAGCAGGTATGGGG 554
BSNT_00666 741 CTATCAATTTTACGGAGATGAGCGAACGGTTGACGTTCATATCAAACGGC 790
|||||||||||||||.|||||.||.||||||||.||||||||.|||||||
RBAM_003990__ 555 CTATCAATTTTACGGCGATGAACGTACGGTTGATGTTCATATTAAACGGC 604
BSNT_00666 791 TGCGGAAAAAGCTTGCCAGCGAGGACAAGCCTTTCCTGTATACTGTGTGG 840
||||.|||||.||..||||.|||||.||.||.||..|.||.||.||||||
RBAM_003990__ 605 TGCGCAAAAAACTGTCCAGTGAGGAAAAACCGTTTTTATACACGGTGTGG 654
BSNT_00666 841 GGAGTAGGGTATAAATTTGATGAAGATTAA 870
||.|||||.||.|||||||||||.||||||
RBAM_003990__ 655 GGGGTAGGATACAAATTTGATGAGGATTAA 684
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