Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00664 and RBAM_003970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00664___yclH.1.9828.seq
# -bsequence dna-align/RBAM_003970___yclH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00664___yclH-RBAM_003970___yclH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00664___yclH-RBAM_003970___yclH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00664___yclH
# 2: RBAM_003970___yclH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 691
# Identity: 538/691 (77.9%)
# Similarity: 538/691 (77.9%)
# Gaps: 17/691 ( 2.5%)
# Score: 2071.5
#
#
#=======================================
BSNT_00664___ 1 ATGAGCTTATTAGAATTTCAACAAGTCGGATACTGGTATAAAGACAAAAG 50
||||||.|||||...||||||||...|||.||||||||..||||||||..
RBAM_003970__ 1 ATGAGCCTATTAACCTTTCAACAGACCGGCTACTGGTACCAAGACAAATC 50
BSNT_00664___ 51 CCAGCCATTGTTTCAGGATATTAAC-ATCAGCTTTCAAAAAGGCAAATTC 99
.|||||..|.|||||||||| |||| |||||||||.|||||||.||.||.
RBAM_003970__ 51 ACAGCCGCTATTTCAGGATA-TAACGATCAGCTTTGAAAAAGGGAAGTTT 99
BSNT_00664___ 100 TACACAATCGTCGGCACATCAGGGACGGGGAAAACCACTTTCCTGTCTCT 149
||.|||||.||||||.|.||.||.|||||.|||||.||.||.||||||||
RBAM_003970__ 100 TATACAATTGTCGGCGCCTCCGGAACGGGAAAAACAACGTTTCTGTCTCT 149
BSNT_00664___ 150 GGCAAGCGGACTTGACGCACCAAAAGAAGGAAACATCCTTTACGACGGAA 199
|||..||||.||||||.||||.|||||.||||.|||||||||..|||||.
RBAM_003970__ 150 GGCGGGCGGCCTTGACACACCTAAAGAGGGAAGCATCCTTTATAACGGAG 199
BSNT_00664___ 200 AAGCGGTGTCTAAAATCGGCTTAACCAATTTCAGAAATCAATATGTATCA 249
|||...|.||.||||||||.||||||||.|||||||||||||||||.||.
RBAM_003970__ 200 AAGACATCTCCAAAATCGGATTAACCAAATTCAGAAATCAATATGTCTCT 249
BSNT_00664___ 250 ATCGTCTTTCAGGCGTACAATCTGCTCCCGTATATGACGGCTTTGCAGAA 299
|||||||||||..|.||..|||||.||||||||||||||||..|.|||||
RBAM_003970__ 250 ATCGTCTTTCAATCTTATCATCTGATCCCGTATATGACGGCGCTCCAGAA 299
BSNT_00664___ 300 CGTCACAACCGCTATGGAAATCACGGGTTCTAAAGAAAAGAACAAAGAAT 349
.||||||||.||.|||||.|||||.||.|||||.||.||.||||||||..
RBAM_003970__ 300 TGTCACAACGGCGATGGAGATCACCGGCTCTAAGGAGAACAACAAAGATG 349
BSNT_00664___ 350 CATATGCGCTTGACATGCTGCAAAAGGTTGGCATCAACGAAAAACAAGCC 399
|.|..|||||...|||||||.||||.||.|||||||.||||.|.||.|||
RBAM_003970__ 350 CGTTCGCGCTCAGCATGCTGAAAAAAGTCGGCATCACCGAACAGCAGGCC 399
BSNT_00664___ 400 CGGCAAAAAGTGCTCACACTGAGCGGCGGACAGCAGCAGCGGGTATCAAT 449
||.||....|||||.|||.|.||||||||||||||||||||.||.|||||
RBAM_003970__ 400 CGTCAGCGGGTGCTGACATTAAGCGGCGGACAGCAGCAGCGCGTTTCAAT 449
BSNT_00664___ 450 TACAAGGGCTTTCTGCTGTGACACGGATCTTATCGTAGCCGATGAACCGA 499
|.|..|||||||||||||||||||||||.|.||....||.||.||.||||
RBAM_003970__ 450 TGCGCGGGCTTTCTGCTGTGACACGGATTTGATTTGCGCGGACGAGCCGA 499
BSNT_00664___ 500 CCGGAAACCTTGATGAGGACACATCAAAAGAAATTGTACGCCTCTTTCAA 549
|.|||||.||.||.|||||.||.|||||.|||||.||.||.||||||||.
RBAM_003970__ 500 CGGGAAATCTCGACGAGGATACGTCAAAGGAAATCGTCCGGCTCTTTCAG 549
BSNT_00664___ 550 GATCTGGCGCACAA----GGAAAATAAATGCGTCATTATGGTGACGCACG 595
|||||||||||.|| || .||||||.||||.|||||||||||||
RBAM_003970__ 550 GATCTGGCGCATAAAGGCGG----CAAATGCATCATCATGGTGACGCACG 595
BSNT_00664___ 596 ATGAACAAATTGCAAAAGTGTCAGACATCAATATCAGACTT-TCAAGAGG 644
|.|||||||||||.|||||.||.||.|||||||||.| ||| ||||||||
RBAM_003970__ 596 ACGAACAAATTGCCAAAGTTTCTGATATCAATATCCG-CTTATCAAGAGG 644
BSNT_00664___ 645 AAGCTTTACTGTGAAGGAAAACGTCGCAGTGGTAT----AA 681
|||.||.||.||.||.|||||||.|.|.|..||.| |
RBAM_003970__ 645 AAGTTTCACAGTAAAAGAAAACGGCACGGCCGTTTCCTGA- 684
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