Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06056 and RBAM_003960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:32
# Commandline: needle
# -asequence dna-align/BSNT_06056___yxeQ.1.9828.seq
# -bsequence dna-align/RBAM_003960___yxeQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06056___yxeQ-RBAM_003960___yxeQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06056___yxeQ-RBAM_003960___yxeQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06056___yxeQ
# 2: RBAM_003960___yxeQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1437
# Identity: 939/1437 (65.3%)
# Similarity: 939/1437 (65.3%)
# Gaps: 189/1437 (13.2%)
# Score: 2824.5
#
#
#=======================================
BSNT_06056___ 1 ATGAGCAAAC--AAGGGCTGACAGCAGGTCTTGCAGAGGCTGTGAGAACG 48
|||| |.|| ||...|||||.||.||.|||||..||||.||.|...||
RBAM_003960__ 1 ATGA--ATACGGAAAATCTGACGGCCGGGCTTGCTCAGGCCGTCATGTCG 48
BSNT_06056___ 49 TCACAACCTG-AGCATTCAGTTGACGCGATTCACGAAGCAAAAAAAGGAT 97
||....||.| |.|| ||.|.|||.|||||..|.|||||....||||||.
RBAM_003960__ 49 TCTGTGCCGGAAACA-TCCGCTGAAGCGATGAAAGAAGCGCGCAAAGGAC 97
BSNT_06056___ 98 TACTTGATTTTACTGCCGCTTCATTCGCAGGAAGAGAAGATAAAGGCATT 147
|.|||||||||.|.||.||..|.||.||.||.|||...||||||||..||
RBAM_003960__ 98 TGCTTGATTTTTCAGCGGCAGCTTTTGCGGGGAGACGGGATAAAGGAGTT 147
BSNT_06056___ 148 CAAAAGCTCCTCCGT----CTGATAGAGGATGAAGGAGGCCTGCCCCTTG 193
.||||||| .|| |||...||.||.|||||.||..||||..|.|
RBAM_003960__ 148 GAAAAGCT----GGTAAAACTGGCCGAAGAAGAAGGCGGGGTGCCGATAG 193
BSNT_06056___ 194 TTCCTATTATCGGACAG--GGCAAAAAGGCCGCGCCATTACAATCCGCGA 241
..||..||||||| ||| ..|||||| .||.||||.|..|||.|||||.
RBAM_003960__ 194 CGCCGCTTATCGG-CAGAAATCAAAAA-ACCACGCCGTCCCAAGCCGCGC 241
BSNT_06056___ 242 TGCTCAATGGATTTATCGCCCATGCATTGGATTTTGATGATGTCCATTCC 291
|..|.||.|||||.|||||.|||||..|.||||||||.|||||.|||||.
RBAM_003960__ 242 TCATTAACGGATTCATCGCACATGCGCTTGATTTTGACGATGTTCATTCT 291
BSNT_06056___ 292 GATGTAAGAGGACACCCCAGTGCCGTCATCGTACCGGCCCTTATTGCATC 341
||||||||||||||.||.||.||.||||||.|.|||||..|.||||||
RBAM_003960__ 292 GATGTAAGAGGACATCCGAGCGCAGTCATCCTTCCGGCTTTGATTGCA-- 339
BSNT_06056___ 342 TGCCGC-TC------GCGGACATGACGA---GCGGCTTCTTGGCGCTTAT 381
||||| || .||||.| |||.| .||..||||.||.||||||
RBAM_003960__ 340 -GCCGCATCAGCCGGCCGGATA-GACAAAAGCCGTTTTCTCGGTGCTTAT 387
BSNT_06056___ 382 GTTGTTGGTGTTGAAGTGATGGCACGGCTGGGAGAATCAATTGGCAGCCG 431
||....||..|||||||||||||.|||||.||.||.|||..|||.||.|.
RBAM_003960__ 388 GTGACGGGAATTGAAGTGATGGCGCGGCTCGGCGAGTCAGCTGGAAGGCA 437
BSNT_06056___ 432 CCACTATGAAAAGGGCTGGCATAATACAGGAACGCTTGGTGCTATCGCTG 481
.||.||.||.||.||||||||.||||||||||||.|.|||||.||.||.|
RBAM_003960__ 438 TCATTACGAGAAAGGCTGGCACAATACAGGAACGTTAGGTGCCATTGCGG 487
BSNT_06056___ 482 CTGCCTGCGCCGTAGGTTATGCTGAGGAGCTTACTCAGGAA--GAGCTGG 529
|.||.||||||||.||.|.|||.|||.|.||.|.||| || .|..||.
RBAM_003960__ 488 CCGCATGCGCCGTCGGATTTGCGGAGAATCTGAATCA--AACCCAATTGC 535
BSNT_06056___ 530 AAAAAGCAATTGGTTTTGCGGCTACGCAATCTGCTGGGATGAGGGTGCAA 579
|.|..||.||.||.|||||||||.|.|..||.|..||.||||||||||||
RBAM_003960__ 536 AGACGGCGATCGGGTTTGCGGCTGCCCGCTCCGGAGGCATGAGGGTGCAA 585
BSNT_06056___ 580 TTTGGAACAGAAATGAAACCGCTGCACGCCGGTCTGGCGGCTCAGGCTGG 629
||.||.|||||||||||.|||||.||||||||.|||||.|||||.||.||
RBAM_003960__ 586 TTCGGGACAGAAATGAAGCCGCTCCACGCCGGACTGGCCGCTCAAGCCGG 635
BSNT_06056___ 630 CTTGCTGGCCGTTAAGCTGGCCCAATCAGAATTTGGCGGGTC-------C 672
.|||.|.|||||..||||.||..|..|.|..||.|||||.|| .
RBAM_003960__ 636 GTTGTTCGCCGTGCAGCTTGCAAAGGCCGGTTTCGGCGGCTCAGTTCATG 685
BSNT_06056___ 673 CGC---ACGGCACTTGATGGAGAAACTGGTTTCTTCAGTCTGTACGGTGA 719
||| |||| ||||||| |||||.|||.|.||||||||.||
RBAM_003960__ 686 CGCTCGACGG--------GGAGAAA--GGTTTTTTCGGACTGTACGGCGA 725
BSNT_06056___ 720 CGTTGAAAAAGCACAA--CATACTTTGCTAAACGATTGGGGGGCACCGTG 767
..|||||...|||.|| |.|.||| .||||||..|||||...|||.||
RBAM_003960__ 726 TCTTGAACGGGCAGAAACCCTCCTT--GTAAACGGGTGGGGAAAACCTTG 773
BSNT_06056___ 768 GAGAATTGTGCAG-CCGGGTCTATGGTTTAAAATCTATCCATTTTGTTCC 816
|.|.|||||| || |||||.||.||||||||..|.|||||.|||||.||.
RBAM_003960__ 774 GCGGATTGTG-AGCCCGGGACTTTGGTTTAAGGTTTATCCGTTTTGCTCG 822
BSNT_06056___ 817 GCGGCACACCATGCTGCAGATGCGGTACGACAGCTTATCTCCGAAGAAAC 866
|||||.||.|||||.||.||.||..|.|...||||.|...|||||
RBAM_003960__ 823 GCGGCTCATCATGCGGCGGACGCCATTCTCAAGCTGAAGGCCGAA----- 867
BSNT_06056___ 867 CA---TTTC---TGCTGCCAATACCGAACGTATTGAAGTGATTTTTCCGC 910
|| |.|| |.|.||||| ||.|||||.||.||.|||||||.|||||
RBAM_003960__ 868 CATGGTCTCACTTTCGGCCAA-ACGGAACGGATCGACGTGATTTATCCGC 916
BSNT_06056___ 911 CAGGCGGAGATGCTGCATTGACGGAAAGATCTCCAAAAACTGGAGA---- 956
|.|||||.||.|||||||||||.|||.|...|||.|||||.||.||
RBAM_003960__ 917 CGGGCGGTGACGCTGCATTGACAGAACGGCGTCCGAAAACAGGCGAAGCG 966
BSNT_06056___ 957 GGAAGGCCGTTTCAGCGTTGAATATGTGATTGCTCTT-GCTTTGCATGGA 1005
|||| |.||||||||.|||||||||||..| ||| ||||||||.||.
RBAM_003960__ 967 GGAA----GATTCAGCGTGGAATATGTGATCAC-CTTAGCTTTGCACGGT 1011
BSNT_06056___ 1006 CACGACCTGACCATTGAACATTTTAACAGCC-AGCCGATCCC--AAACGG 1052
.|.||..|..|..||||||| |||.|||.|| |||||||.|| ||.|
RBAM_003960__ 1012 AAGGATTTTTCAGTTGAACA-TTTCACATCCGAGCCGATTCCGGAATC-- 1058
BSNT_06056___ 1053 CATTCAAACGACAA----TAGGGCATATTCAGCGCGTAT---ATGAC--A 1093
|.|||||| || |.|.||..|||||.|||...| ||||| |
RBAM_003960__ 1059 CCTTCAAA----AAGGATTTGAGCGGATTCACCGCAGCTGCGATGACCAA 1104
BSNT_06056___ 1094 ATGCTACTCAGCCGGCTCCCCATGCCGTTCCAAAAGGCCGTTTCACGATT 1143
|| ||||||||||..|.|.||||||||.||.||||||||.||.|||
RBAM_003960__ 1105 AT-----TCAGCCGGCTGACAACGCCGTTCCGAAGGGCCGTTTTACAATT 1149
BSNT_06056___ 1144 GTCCGGGCCTATTTATCAGACGGC------CGG--------ATTTGCGAA 1179
||.||||.| ||||| ||| || |||
RBAM_003960__ 1150 GTACGGGTC----------ACGGCTTCCGGCGGTCATGTCTAT----GAA 1185
BSNT_06056___ 1180 GCGCGTGTGGACTGCCCAAAAGGGGCGCCAGGAAATGAGCTGTCTGAAGA 1229
.|.|||.|.|||||.||.||.||.|||||.|||||.|..||.||||||.|
RBAM_003960__ 1186 ACACGTATCGACTGTCCGAAGGGAGCGCCGGGAAACGGCCTTTCTGAAAA 1235
BSNT_06056___ 1230 AGACATAATAGAAAAATTGATATTAACGGTTCCGC-------------AA 1266
||||||...|||.|||.| .|||.| ||| .|
RBAM_003960__ 1236 AGACATTGAAGACAAACT-------CCGGCT-CGCTTTGCCGGGAGAAGA 1277
BSNT_06056___ 1267 GAAAAAGCGC-GACGCATTATAACATCCGTTGAAAA--AGCCG---ATAT 1310
||||||| || ||.|.||| .||| ||| ||||| | ||
RBAM_003960__ 1278 GAAAAAG-GCGGAAGAATT----GATC------AAAGCAGCCGGACA-AT 1315
BSNT_06056___ 1311 AAAAGA---------ATTTTTAGCTCATATTGAATAA 1338
.|||.| ||||..||||.|||| ||
RBAM_003960__ 1316 CAAATATTGACCGTTATTTACAGCTGATAT--AA--- 1347
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