Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06056 and RBAM_003960

See Amino acid alignment / Visit BSNT_06056 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:32
# Commandline: needle
#    -asequence dna-align/BSNT_06056___yxeQ.1.9828.seq
#    -bsequence dna-align/RBAM_003960___yxeQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06056___yxeQ-RBAM_003960___yxeQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06056___yxeQ-RBAM_003960___yxeQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06056___yxeQ
# 2: RBAM_003960___yxeQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1437
# Identity:     939/1437 (65.3%)
# Similarity:   939/1437 (65.3%)
# Gaps:         189/1437 (13.2%)
# Score: 2824.5
# 
#
#=======================================

BSNT_06056___      1 ATGAGCAAAC--AAGGGCTGACAGCAGGTCTTGCAGAGGCTGTGAGAACG     48
                     ||||  |.||  ||...|||||.||.||.|||||..||||.||.|...||
RBAM_003960__      1 ATGA--ATACGGAAAATCTGACGGCCGGGCTTGCTCAGGCCGTCATGTCG     48

BSNT_06056___     49 TCACAACCTG-AGCATTCAGTTGACGCGATTCACGAAGCAAAAAAAGGAT     97
                     ||....||.| |.|| ||.|.|||.|||||..|.|||||....||||||.
RBAM_003960__     49 TCTGTGCCGGAAACA-TCCGCTGAAGCGATGAAAGAAGCGCGCAAAGGAC     97

BSNT_06056___     98 TACTTGATTTTACTGCCGCTTCATTCGCAGGAAGAGAAGATAAAGGCATT    147
                     |.|||||||||.|.||.||..|.||.||.||.|||...||||||||..||
RBAM_003960__     98 TGCTTGATTTTTCAGCGGCAGCTTTTGCGGGGAGACGGGATAAAGGAGTT    147

BSNT_06056___    148 CAAAAGCTCCTCCGT----CTGATAGAGGATGAAGGAGGCCTGCCCCTTG    193
                     .|||||||    .||    |||...||.||.|||||.||..||||..|.|
RBAM_003960__    148 GAAAAGCT----GGTAAAACTGGCCGAAGAAGAAGGCGGGGTGCCGATAG    193

BSNT_06056___    194 TTCCTATTATCGGACAG--GGCAAAAAGGCCGCGCCATTACAATCCGCGA    241
                     ..||..||||||| |||  ..|||||| .||.||||.|..|||.|||||.
RBAM_003960__    194 CGCCGCTTATCGG-CAGAAATCAAAAA-ACCACGCCGTCCCAAGCCGCGC    241

BSNT_06056___    242 TGCTCAATGGATTTATCGCCCATGCATTGGATTTTGATGATGTCCATTCC    291
                     |..|.||.|||||.|||||.|||||..|.||||||||.|||||.|||||.
RBAM_003960__    242 TCATTAACGGATTCATCGCACATGCGCTTGATTTTGACGATGTTCATTCT    291

BSNT_06056___    292 GATGTAAGAGGACACCCCAGTGCCGTCATCGTACCGGCCCTTATTGCATC    341
                     ||||||||||||||.||.||.||.||||||.|.|||||..|.||||||  
RBAM_003960__    292 GATGTAAGAGGACATCCGAGCGCAGTCATCCTTCCGGCTTTGATTGCA--    339

BSNT_06056___    342 TGCCGC-TC------GCGGACATGACGA---GCGGCTTCTTGGCGCTTAT    381
                      ||||| ||      .||||.| |||.|   .||..||||.||.||||||
RBAM_003960__    340 -GCCGCATCAGCCGGCCGGATA-GACAAAAGCCGTTTTCTCGGTGCTTAT    387

BSNT_06056___    382 GTTGTTGGTGTTGAAGTGATGGCACGGCTGGGAGAATCAATTGGCAGCCG    431
                     ||....||..|||||||||||||.|||||.||.||.|||..|||.||.|.
RBAM_003960__    388 GTGACGGGAATTGAAGTGATGGCGCGGCTCGGCGAGTCAGCTGGAAGGCA    437

BSNT_06056___    432 CCACTATGAAAAGGGCTGGCATAATACAGGAACGCTTGGTGCTATCGCTG    481
                     .||.||.||.||.||||||||.||||||||||||.|.|||||.||.||.|
RBAM_003960__    438 TCATTACGAGAAAGGCTGGCACAATACAGGAACGTTAGGTGCCATTGCGG    487

BSNT_06056___    482 CTGCCTGCGCCGTAGGTTATGCTGAGGAGCTTACTCAGGAA--GAGCTGG    529
                     |.||.||||||||.||.|.|||.|||.|.||.|.|||  ||  .|..||.
RBAM_003960__    488 CCGCATGCGCCGTCGGATTTGCGGAGAATCTGAATCA--AACCCAATTGC    535

BSNT_06056___    530 AAAAAGCAATTGGTTTTGCGGCTACGCAATCTGCTGGGATGAGGGTGCAA    579
                     |.|..||.||.||.|||||||||.|.|..||.|..||.||||||||||||
RBAM_003960__    536 AGACGGCGATCGGGTTTGCGGCTGCCCGCTCCGGAGGCATGAGGGTGCAA    585

BSNT_06056___    580 TTTGGAACAGAAATGAAACCGCTGCACGCCGGTCTGGCGGCTCAGGCTGG    629
                     ||.||.|||||||||||.|||||.||||||||.|||||.|||||.||.||
RBAM_003960__    586 TTCGGGACAGAAATGAAGCCGCTCCACGCCGGACTGGCCGCTCAAGCCGG    635

BSNT_06056___    630 CTTGCTGGCCGTTAAGCTGGCCCAATCAGAATTTGGCGGGTC-------C    672
                     .|||.|.|||||..||||.||..|..|.|..||.|||||.||       .
RBAM_003960__    636 GTTGTTCGCCGTGCAGCTTGCAAAGGCCGGTTTCGGCGGCTCAGTTCATG    685

BSNT_06056___    673 CGC---ACGGCACTTGATGGAGAAACTGGTTTCTTCAGTCTGTACGGTGA    719
                     |||   ||||        |||||||  |||||.|||.|.||||||||.||
RBAM_003960__    686 CGCTCGACGG--------GGAGAAA--GGTTTTTTCGGACTGTACGGCGA    725

BSNT_06056___    720 CGTTGAAAAAGCACAA--CATACTTTGCTAAACGATTGGGGGGCACCGTG    767
                     ..|||||...|||.||  |.|.|||  .||||||..|||||...|||.||
RBAM_003960__    726 TCTTGAACGGGCAGAAACCCTCCTT--GTAAACGGGTGGGGAAAACCTTG    773

BSNT_06056___    768 GAGAATTGTGCAG-CCGGGTCTATGGTTTAAAATCTATCCATTTTGTTCC    816
                     |.|.|||||| || |||||.||.||||||||..|.|||||.|||||.||.
RBAM_003960__    774 GCGGATTGTG-AGCCCGGGACTTTGGTTTAAGGTTTATCCGTTTTGCTCG    822

BSNT_06056___    817 GCGGCACACCATGCTGCAGATGCGGTACGACAGCTTATCTCCGAAGAAAC    866
                     |||||.||.|||||.||.||.||..|.|...||||.|...|||||     
RBAM_003960__    823 GCGGCTCATCATGCGGCGGACGCCATTCTCAAGCTGAAGGCCGAA-----    867

BSNT_06056___    867 CA---TTTC---TGCTGCCAATACCGAACGTATTGAAGTGATTTTTCCGC    910
                     ||   |.||   |.|.||||| ||.|||||.||.||.|||||||.|||||
RBAM_003960__    868 CATGGTCTCACTTTCGGCCAA-ACGGAACGGATCGACGTGATTTATCCGC    916

BSNT_06056___    911 CAGGCGGAGATGCTGCATTGACGGAAAGATCTCCAAAAACTGGAGA----    956
                     |.|||||.||.|||||||||||.|||.|...|||.|||||.||.||    
RBAM_003960__    917 CGGGCGGTGACGCTGCATTGACAGAACGGCGTCCGAAAACAGGCGAAGCG    966

BSNT_06056___    957 GGAAGGCCGTTTCAGCGTTGAATATGTGATTGCTCTT-GCTTTGCATGGA   1005
                     ||||    |.||||||||.|||||||||||..| ||| ||||||||.||.
RBAM_003960__    967 GGAA----GATTCAGCGTGGAATATGTGATCAC-CTTAGCTTTGCACGGT   1011

BSNT_06056___   1006 CACGACCTGACCATTGAACATTTTAACAGCC-AGCCGATCCC--AAACGG   1052
                     .|.||..|..|..||||||| |||.|||.|| |||||||.||  ||.|  
RBAM_003960__   1012 AAGGATTTTTCAGTTGAACA-TTTCACATCCGAGCCGATTCCGGAATC--   1058

BSNT_06056___   1053 CATTCAAACGACAA----TAGGGCATATTCAGCGCGTAT---ATGAC--A   1093
                     |.||||||    ||    |.|.||..|||||.|||...|   |||||  |
RBAM_003960__   1059 CCTTCAAA----AAGGATTTGAGCGGATTCACCGCAGCTGCGATGACCAA   1104

BSNT_06056___   1094 ATGCTACTCAGCCGGCTCCCCATGCCGTTCCAAAAGGCCGTTTCACGATT   1143
                     ||     ||||||||||..|.|.||||||||.||.||||||||.||.|||
RBAM_003960__   1105 AT-----TCAGCCGGCTGACAACGCCGTTCCGAAGGGCCGTTTTACAATT   1149

BSNT_06056___   1144 GTCCGGGCCTATTTATCAGACGGC------CGG--------ATTTGCGAA   1179
                     ||.||||.|          |||||      |||        ||    |||
RBAM_003960__   1150 GTACGGGTC----------ACGGCTTCCGGCGGTCATGTCTAT----GAA   1185

BSNT_06056___   1180 GCGCGTGTGGACTGCCCAAAAGGGGCGCCAGGAAATGAGCTGTCTGAAGA   1229
                     .|.|||.|.|||||.||.||.||.|||||.|||||.|..||.||||||.|
RBAM_003960__   1186 ACACGTATCGACTGTCCGAAGGGAGCGCCGGGAAACGGCCTTTCTGAAAA   1235

BSNT_06056___   1230 AGACATAATAGAAAAATTGATATTAACGGTTCCGC-------------AA   1266
                     ||||||...|||.|||.|       .|||.| |||             .|
RBAM_003960__   1236 AGACATTGAAGACAAACT-------CCGGCT-CGCTTTGCCGGGAGAAGA   1277

BSNT_06056___   1267 GAAAAAGCGC-GACGCATTATAACATCCGTTGAAAA--AGCCG---ATAT   1310
                     ||||||| || ||.|.|||    .|||      |||  |||||   | ||
RBAM_003960__   1278 GAAAAAG-GCGGAAGAATT----GATC------AAAGCAGCCGGACA-AT   1315

BSNT_06056___   1311 AAAAGA---------ATTTTTAGCTCATATTGAATAA   1338
                     .|||.|         ||||..||||.||||  ||   
RBAM_003960__   1316 CAAATATTGACCGTTATTTACAGCTGATAT--AA---   1347


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