Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00662 and RBAM_003890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00662___gerKB.1.9828.seq
# -bsequence dna-align/RBAM_003890___gerKB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00662___gerKB-RBAM_003890___gerKB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00662___gerKB-RBAM_003890___gerKB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00662___gerKB
# 2: RBAM_003890___gerKB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1174
# Identity: 781/1174 (66.5%)
# Similarity: 781/1174 (66.5%)
# Gaps: 107/1174 ( 9.1%)
# Score: 2417.0
#
#
#=======================================
BSNT_00662___ 1 ATGGAAAAAGCCAGAATAAGCATAAGGCAGCTGTTTGTCATGATTATCAT 50
||||||||.||.|.|||..|||...|.|||||||||.|.|||||.||..|
RBAM_003890__ 1 ATGGAAAATGCGAAAATCGGCACGCGTCAGCTGTTTATTATGATCATTTT 50
BSNT_00662___ 51 TTTTGAACTGGGCAGCTCCTTATTGATTACACCGGGATCAATGG-CGGGC 99
.||||||.|||||||.||.||||||||..|.|||||..|.|||| |||||
RBAM_003890__ 51 GTTTGAATTGGGCAGTTCGTTATTGATCCCGCCGGGCACGATGGCCGGGC 100
BSNT_00662___ 100 AGGGATGCTTGGATAGCAGTTTTATTAGGCTGTGCG--ATCGGACTGTTT 147
|||||||.|||.|..|.||..|..|.|| ||||| |||||.||....
RBAM_003890__ 101 -GGGATGCGTGGCTGTCCGTGCTTCTCGG--GTGCGTTATCGGTCTCGGA 147
BSNT_00662___ 148 CTTTTCT--GTTTGTATCAAGGC-ATTTATCAATGTTATCCGAATTCTTC 194
||||||| ||| |||| |||| .|.|||||||.||.|||..|.|||||
RBAM_003890__ 148 CTTTTCTACGTT--TATC-AGGCGCTGTATCAATTTTTTCCTGAGTCTTC 194
BSNT_00662___ 195 TCCGAAAGAATATATGGATGATATGCTGGGAACCAAGCTGAGCTGGCTGT 244
|||||.|||.||.|||.|.||..||.|.||.|...|.|||||||||..|.
RBAM_003890__ 195 TCCGAGAGATTACATGAACGAACTGATCGGCAGACATCTGAGCTGGGCGG 244
BSNT_00662___ 245 TTTCATTTCTCTATATATTGTACTTTGCCTATAATGCCGCAAGGGTGCTG 294
|.||..||||.|||||..|.||.|||||.||||..|||||..|.||..||
RBAM_003890__ 245 TCTCGCTTCTTTATATTCTCTATTTTGCTTATATCGCCGCCCGCGTATTG 294
BSNT_00662___ 295 CGTGACTTTGGAGAAATGCTGCTGACGTTTGCTTATCATGATACACCTAT 344
||.||.|||||.||||||||..|.||.||.||.||.||.||.||.||.||
RBAM_003890__ 295 CGGGATTTTGGCGAAATGCTTGTCACCTTCGCCTACCAGGACACGCCAAT 344
BSNT_00662___ 345 CATTATTGTAAATGCTTTATTAATGGTAGTAAGC-ATATATGCCGTAAGA 393
..|.|||||.|||||..|..|.|||.|.| ..|| ||||..||.||.|||
RBAM_003890__ 345 TTTAATTGTGAATGCCATGCTGATGATCG-CCGCGATATTCGCGGTCAGA 393
BSNT_00662___ 394 AAAGGAATTGAAGTACTCGCACGCGCTGCCGAACTTCTTTTCGGGGTCAT 443
||.|||||||||||..|.||..|.||.|.|||.||.||.||.||..|.||
RBAM_003890__ 394 AAGGGAATTGAAGTGATAGCGAGAGCCGGCGAGCTGCTGTTTGGCATTAT 443
BSNT_00662___ 444 GTATTTACTGGGCGCGATCGGGCTCGTGCTGATTATTGTCTCAGGCACTA 493
||||||.|||...||..|||||||..|.||.|||||...|||||||||.|
RBAM_003890__ 444 GTATTTCCTGACAGCCGTCGGGCTGATCCTCATTATCAGCTCAGGCACGA 493
BSNT_00662___ 494 TAGACCCGCACAATT-TAAAGCCGGTTTTGGC-----------AAACGGT 531
|| |.||.||.|.|| |..||||.|||||.|| .||||||
RBAM_003890__ 494 TA-AACCTCAGATTTCTCCAGCCCGTTTTAGCGGAGGGTGCAGGAACGGT 542
BSNT_00662___ 532 -ATTTCTCCTATCCTTCACTCTGTTTTCACGCAGACCATGTACGTCCCAT 580
|||| |.||.||.||.|..|||||.||||.|.||||.|
RBAM_003890__ 543 CATTT------------ATTCCGTGTTTAAACAGACGATGTTCATCCCGT 580
BSNT_00662___ 581 TTGGTGAAGTCGTTTTATTTGTGATGATTTTCCC-TATCCTGAATAACAG 629
|.||||||.|..|..|.|||||.||||||||||| ||| .|||.||
RBAM_003890__ 581 TCGGTGAATTAATCGTGTTTGTCATGATTTTCCCTTAT-----TTAAAAG 625
BSNT_00662___ 630 A----AAAGATGTAAAAAAAATGGGGATGATTGCCATGGCTATT------ 669
| |||.|.||.||.||||..| ||||.| ||||.|||
RBAM_003890__ 626 ATCGGAAAAAGGTGAAGAAAACCG----GATTTC--TGGCGATTATCATC 669
BSNT_00662___ 670 AGCGGATTGGTTGTGGCGCTCACCGTGGCGATTAATATCAGCGTGCTTGA 719
|||||..||.||.||||..|..|.||||||||||||||..|.|||||.||
RBAM_003890__ 670 AGCGGGCTGTTTTTGGCAATGTCAGTGGCGATTAATATTTGTGTGCTGGA 719
BSNT_00662___ 720 TGTTGATCTTACA--CTCAGATCCCAGTTCCCGCTTTTAAGTACGATCCA 767
.| |.|.|||| | |||.|.||.||.||.|||||..|.||.||.||.||
RBAM_003890__ 720 CG-TCAACTTA-ATGCTCCGCTCTCAATTTCCGCTGCTGAGCACCATACA 767
BSNT_00662___ 768 GACAATCAAGGTCGAAGAATTTTTAGACCGGCTCGATGTCTTTTTTATGC 817
||||||.||.||.|||||.||||||||||||||.|||||||||||.||||
RBAM_003890__ 768 GACAATTAAAGTGGAAGAGTTTTTAGACCGGCTGGATGTCTTTTTCATGC 817
BSNT_00662___ 818 TGGCGCTGATCATCGGCGGCTTCTTTAAGGTTAGCCTCTACTT--ATATG 865
|.|.|||..||||||||||.||.||.||.||.|||||.| || |||||
RBAM_003890__ 818 TCGTGCTCGTCATCGGCGGTTTTTTCAAAGTCAGCCTTT--TTACATATG 865
BSNT_00662___ 866 CCACTGTGGTTGGGACATCTACGCTCTTTAAGGAAAAGAATCTCTCTCAA 915
|...|||.||.||....||.|||||.|||||.|||||.||||..||.||.
RBAM_003890__ 866 CGGTTGTCGTGGGCGTGTCCACGCTGTTTAAAGAAAAAAATCCGTCCCAG 915
BSNT_00662___ 916 TTGGCTTATCCGATGGGATTGGGCATCTTAATCCTTTCTTTAACGATCGC 965
.||||.|..|||.|.||||||||..|..|.||.||.||..|.|..|||||
RBAM_003890__ 916 CTGGCCTTCCCGGTCGGATTGGGGGTGCTGATTCTCTCCATCAGCATCGC 965
BSNT_00662___ 966 AACTAACTTTTCAGAGCACTTGAACGAAGGCTTGAACGTGGTGCCGCTGT 1015
||..||.|||||.||.|||.||||.||||||||.|||.|.||||||.|.|
RBAM_003890__ 966 AAGCAATTTTTCGGAACACATGAATGAAGGCTTAAACATTGTGCCGATCT 1015
BSNT_00662___ 1016 ATATTCATTTGCCTTTTCAATTATTGTTTCCGCTCTTTCTGTTTATTGTG 1065
||||||||.|.||.||||||.|..||||.||..|.||.|||.||||..|.
RBAM_003890__ 1016 ATATTCATCTTCCGTTTCAAGTGCTGTTCCCCGTTTTGCTGCTTATCATT 1065
BSNT_00662___ 1066 GCTGTTTGGAAAAAGAAACGAAGAGAGAAGTCAAAAGGGAC--------- 1106
||.||| |..|||||| ||| ||| ||||||||
RBAM_003890__ 1066 GCCGTT---ATTAAGAAA--AAG------GTC-AAAGGGACCGTCTATAC 1103
BSNT_00662___ 1107 --------AGGAATAAAGGAATGA 1122
||.|||||
RBAM_003890__ 1104 AGTTTCGAAGAAATAA-------- 1119
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