Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00661 and RBAM_003880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00661___gerKC.1.9828.seq
# -bsequence dna-align/RBAM_003880___gerKC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00661___gerKC-RBAM_003880___gerKC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00661___gerKC-RBAM_003880___gerKC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00661___gerKC
# 2: RBAM_003880___gerKC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity: 874/1297 (67.4%)
# Similarity: 874/1297 (67.4%)
# Gaps: 143/1297 (11.0%)
# Score: 2704.0
#
#
#=======================================
BSNT_00661___ 1 ATG----GTACGTAAATGTCTATTAGTCGTTCTCATGCT-----TTTGAG 41
||| | ||||||||| .||||| ||||..
RBAM_003880__ 1 ATGAAAAG-ACGTAAATG---------------GATGCTTATCCTTTGTA 34
BSNT_00661___ 42 CG-------CCATTGTG---CTGCCCGGCTGCTGGGATAAGAGGGAGCTG 81
|| ||.||.|| .|..||||.|||||||||||.|||||||||
RBAM_003880__ 35 CGATGGTTTCCTTTATGTTTGTATCCGGATGCTGGGATAAAAGGGAGCTG 84
BSNT_00661___ 82 ACGGATCTTGCGATTATCTCGGCGATTGGCATCGATCGGAC--AAACGAC 129
||.|||.|.|||.|.|||||.||.||.||.||.||.||||| |||||
RBAM_003880__ 85 ACCGATTTAGCGGTGATCTCCGCCATCGGTATTGACCGGACCGAAACG-- 132
BSNT_00661___ 130 AGCAACTACGTGCTGCATCTT-CAAATTATCAATCCAGGGAATGTTGCCG 178
.|.||.|||||.||.|| ||| ||||||||||||||.||.||.||.||||
RBAM_003880__ 133 GGAAAATACGTCCTTCA-CTTGCAAATTATCAATCCGGGAAACGTGGCCG 181
BSNT_00661___ 179 GCTACCTTCAGGGAGGAGGTGGTGGAGACAGGCCGCCTGTATCTGTCTAT 228
||...||.|||||.||.||.|..||||||.||||.||.||.||.||||||
RBAM_003880__ 182 GCGGTCTGCAGGGCGGCGGAGCGGGAGACCGGCCTCCGGTTTCCGTCTAT 231
BSNT_00661___ 229 TCGATTGAAGGTAACAATTTAACGGAAGCACTCAGAAAAGCCTCCATAAA 278
|||.|....||..|||||.|.||||||||..|.|||||||.|||.||.||
RBAM_003880__ 232 TCGGTGTCCGGAGACAATATGACGGAAGCTTTGAGAAAAGGCTCGATGAA 281
BSNT_00661___ 279 GGTATCACGGCGGCTTTATTTTGCCCATACCAATCTAGTCGTGATCAATG 328
.||.||..|..||||.||||||||.|||||.|||||.||.|||.|||.||
RBAM_003880__ 282 AGTGTCCAGAAGGCTCTATTTTGCGCATACGAATCTCGTGGTGTTCAGTG 331
BSNT_00661___ 329 AAAAGCTGGCAAAAGAAGAAGGTTTGGATTTTGTATTAGATAATCTTGAC 378
||||.|||||.|||||.|||||..|...||||.|..|.||.|||||||||
RBAM_003880__ 332 AAAAACTGGCGAAAGAGGAAGGGCTCAGTTTTATCCTGGACAATCTTGAC 381
BSNT_00661___ 379 CGGGACACAGAATTTAGGTCAACAGCAACATTCGTCGTTGCCCATAAAAC 428
||.|||||.|||||.|||.|.||.|||||..|.||..|.||.|||||...
RBAM_003880__ 382 CGCGACACCGAATTCAGGACGACCGCAACCGTTGTGATCGCGCATAATTG 431
BSNT_00661___ 429 AAAAGCAGAAAATATTGTGAAAATCTTGACGCCAATTGATAAAATTCCAT 478
.||.||.|||.|.|||.|.|||.|..|||||||.|||||||||||.||.|
RBAM_003880__ 432 CAAGGCTGAAGACATTATTAAAGTGCTGACGCCGATTGATAAAATCCCTT 481
BSNT_00661___ 479 CAAATAAAGTCAATAAAAC-CTTGGATTTCACGGAGGCGCAATACGGGCA 527
|.||||||||.||.||.|| ||..| .||||||.|||..|||||| ||||
RBAM_003880__ 482 CCAATAAAGTGAACAAGACGCTCAG-CTTCACGCAGGAACAATAC-GGCA 529
BSNT_00661___ 528 G-GTGGTCAATACCAATATTCAGGACGTT----TTGAAAACACTTGCCGC 572
| ||..|.||.|||||..||||||||||| ||||...|.||| |.|
RBAM_003880__ 530 GAGTCATTAAAACCAACCTTCAGGACGTTCTGATTGATCTCGCTT--CTC 577
BSNT_00661___ 573 CAACACTATGG--CACCGGTCATCCCCGGATTTATG--ATGATTGGTGAC 618
|.|| .|| |.|||.|.||.||.|| ||||| |||...||.|||
RBAM_003880__ 578 CGAC----CGGGTCGCCGTTTATTCCGGG--TTATGAAATGCACGGAGAC 621
BSNT_00661___ 619 GATAAAAAAGGAGTC--AGCATGGAAAACACGCAGGCGACTGACCCGAAA 666
||||||...| ||| |..||||||||.||||||.|.|||||.||||||
RBAM_003880__ 622 GATAAAGCCG--GTCCTACGATGGAAAATACGCAGACAACTGAACCGAAA 669
BSNT_00661___ 667 GCCATTCT-TCAGGCAGATGGTCTGGCGGTTTTTGATA--------AGGC 707
||..|.|| ||| ||.||.||.||||||||.||..|.| ||||
RBAM_003880__ 670 GCAGTGCTGTCA-GCGGACGGACTGGCGGTGTTCAAAAAGGATGGGAGGC 718
BSNT_00661___ 708 AGGATATTTAAAGTATTGGCTGGAAGATGATGAAAGCGTGGGGGCAGTCT 757
.|||| ||.|||.|.||.|||||.||.||.||||||||.||.|
RBAM_003880__ 719 TGGAT--------TACTGGATTGAGGATGACGACAGTGTGGGGGCTGTAT 760
BSNT_00661___ 758 GGCTTATGAATAAGATCCAGCATACGTTGATTAATGCTGACTGGGGCAAG 807
||||..|.||||.||||.||||||||||.||.|||||.||.||| |||
RBAM_003880__ 761 GGCTGCTCAATAGGATCAAGCATACGTTCATCAATGCGGATTGG---AAG 807
BSNT_00661___ 808 A---CGAAGGATGCGGTCAGCTTGCAGGTTACCCATCAAGATACAAAGCT 854
| .||||.||||..||||..|||||||.||||..||..||||||||.|
RBAM_003880__ 808 AATGTGAAGCATGCAATCAGTCTGCAGGTCACCCGCCAGAATACAAAGGT 857
BSNT_00661___ 855 GGTAC--CGAAAATGCGGAACGGACGTCCGTACATCCATGTGAAAGTG-T 901
| || |.|...|.|.|||||||...|||.|.||.||.|||.| || |
RBAM_003880__ 858 G--ACGGCCACTTTTCCGAACGGAAAACCGCATATTCACGTGCA--TGCT 903
BSNT_00661___ 902 C-GGTTGAAGGTATTATTGATGCTGTCAAATACCCTTTCCAATTGTCTGA 950
| |||.|||||..|..|.||.|||||||.||||||||||||..|||||||
RBAM_003880__ 904 CAGGTCGAAGGGCTGGTGGACGCTGTCAGATACCCTTTCCATCTGTCTGA 953
BSNT_00661___ 951 TCC-CAAGGTGCTG--GCCGCTATTGAAAAAGCGCTCAACAAAG-----A 992
||| ||| |||||| |.|| ||..||||.|||||| || |
RBAM_003880__ 954 TCCGCAA-GTGCTGATGACG--ATGCAAAAGGCGCTC-----AGTGTGCA 995
BSNT_00661___ 993 GCTTGAAAAGGAAATTAGCCATACTGTGAAAAAGATTAAGAAGA-ATAAA 1041
||||||.||.||.||.|.| |||..|||| ||||| |||||
RBAM_003880__ 996 GCTTGAGAAAGATATCACC---------AAATCGATT--GAAGATATAAA 1034
BSNT_00661___ 1042 -----ATA-----GATTTTATCGGTTTTGGTGACACGATATATAGAAAGT 1081
||| ||.||..||||.||.||.|||..|||.|||.|.|||.
RBAM_003880__ 1035 AGCCCATAAGAATGACTTCGTCGGCTTCGGAGACCTGATCTATCGGAAGC 1084
BSNT_00661___ 1082 ATCCGGAGCAGTGGGAGAAAAT--GAAGGACACATGGGACAAAGAATATT 1129
||||||| ||...|||.|||.| ||||| .|..|||||..|||||||||
RBAM_003880__ 1085 ATCCGGA-CAAATGGAAAAAGTTCGAAGG-GAAGTGGGATGAAGAATATT 1132
BSNT_00661___ 1130 TGCCCGAACTGCCCATCGATGTGAAGGCCG-AGACGTATATCAGAAGGAC 1178
|.|||.|.||.|||.|.|||||.||..|.| ||.|.| |||||||||.||
RBAM_003880__ 1133 TCCCCAATCTCCCCGTAGATGTCAAAACGGAAGTCAT-TATCAGAAGAAC 1181
BSNT_00661___ 1179 GGGATTGCGAAACGATCCGATCAAACACCAGTTTAAAGATGATTAG- 1224
|||.|||||.||..||||..||..|.||.||.||.|..|||||| |
RBAM_003880__ 1182 GGGCTTGCGGAATAATCCTCTCTCAGACAAGCTTGAGCATGATT-GA 1227
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