Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00660 and RBAM_003870
See
Amino acid alignment /
Visit
BSNT_00660 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:24
# Commandline: needle
# -asequence dna-align/BSNT_00660___gerKA.1.9828.seq
# -bsequence dna-align/RBAM_003870___gerKA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00660___gerKA-RBAM_003870___gerKA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00660___gerKA-RBAM_003870___gerKA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00660___gerKA
# 2: RBAM_003870___gerKA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1711
# Identity: 1192/1711 (69.7%)
# Similarity: 1192/1711 (69.7%)
# Gaps: 146/1711 ( 8.5%)
# Score: 4005.5
#
#
#=======================================
BSNT_00660___ 1 ATGCCTTTATTTTCTAAGC----GAAAGAACAATA--CCGGTTCAAAA-- 42
|||||...|||||.||||| ||||.||.||.| || |.||||||
RBAM_003870__ 1 ATGCCGCCATTTTTTAAGCAGAAGAAACAAAAAAAAGCC-GATCAAAACG 49
BSNT_00660___ 43 -----GACAA-----GCAGAATACTGACGAAAGGAACCAGGAACAG-CAG 81
||||| ||| ||||.|||.| |.|||| |||
RBAM_003870__ 50 ACCGTGACAATGAAGGCA----------GAAAAGAAGC--GGACAGCCAG 87
BSNT_00660___ 82 CAAGAAAAAGAAAGGCCGGTT---CTCATTTCTCCAAGTTTGGCAAAG-- 126
|..||.||||| ||.||.| |..||.||.|..||.|| ||||
RBAM_003870__ 88 CCGGACAAAGA---GCGGGATGAGCCGATCTCCCTCAGCTT---AAAGCA 131
BSNT_00660___ 127 -AATATAGCGGAAACGAAAAAG--------GAAG-TCGGAAGCAGCTCTG 166
||||| |||.||| ||.| ||||.|.|||..|.|
RBAM_003870__ 132 AAATAT---------GAAGAAGCTGTCTGAGAGGTTCGGCAACAGTGCCG 172
BSNT_00660___ 167 ACGTCATCATTCGCGAGATTAAAATCGGGGAGCAGGATCAT--GTCCACC 214
|.|||.||||.|||..|.||||||||||..|..|.||.|.| |.||
RBAM_003870__ 173 ATGTCGTCATCCGCCGGCTTAAAATCGGAAAAGAAGAGCTTCCGGCC--- 219
BSNT_00660___ 215 TAGCTGTTATCTATATTGCTGGGCTGGTCGA-TAATAACACG-------A 256
||..||.|.|||||.||.||..||||.|| .||.|.|.|| |
RBAM_003870__ 220 --GCAATTGTGTATATCGCCGGTTTGGTAGACGAACAGCTCGTCAGCCAA 267
BSNT_00660___ 257 TCCAT----GAGTCGTTAATTGA---CCCATTGGTACAGGATGAGTCTAT 299
|||.| |||...|||||.|| |||.|..||.|||
RBAM_003870__ 268 TCCCTTCTGGAGGATTTAATCGACATCCCGTCCGTTCAG----------- 306
BSNT_00660___ 300 CCAGAATACTCATGCGATCCAGC---AAATTCTTGAAAAAACGCTCCCGC 346
||.||| ||.|||.| |.|| |.||.| ||.||||||||..||.
RBAM_003870__ 307 CCGGAA----CAAGCGGT-CTGCCTGATATAC--GATAAAACGCTTGCGA 349
BSNT_00660___ 347 TGGGCGGGGTGAAAGCGG----AAAAGAGCTGGGACAAG-CTTTTTTCCG 391
|.|||||||||||||.|| |||| .|||.||| ||||.|.|||
RBAM_003870__ 350 TCGGCGGGGTGAAAGAGGCAGAAAAA-----TGGAAAAGTCTTTATGCCG 394
BSNT_00660___ 392 AGTTAATGCTCGGCAATGCGCTCATTTTTGCTGATGGCCATGATGAAGCT 441
.|.|..||...||||...||||||||||||..||.||...|||..|.||.
RBAM_003870__ 395 GGCTGGTGGCGGGCAGCACGCTCATTTTTGTCGACGGGGCTGACAAGGCG 444
BSNT_00660___ 442 TTGATTTGCAGCACTCAAGGGGGAGAGCAGCGCTCCATCCAAGAGCCGAG 491
.||||...||||||..|||||||||||||.||.|||||.|||||||||||
RBAM_003870__ 445 CTGATCGCCAGCACGGAAGGGGGAGAGCATCGGTCCATTCAAGAGCCGAG 494
BSNT_00660___ 492 CACCCAGGCGTCATTCCGCGGTCCGCGCCAAGGGTTTACAGAGTCTCTGC 541
||||||||..||.||||||||.|||||.||.||.||.||.||.|||||||
RBAM_003870__ 495 CACCCAGGTCTCTTTCCGCGGCCCGCGGCAGGGATTCACTGAATCTCTGC 544
BSNT_00660___ 542 AAACCAATATTTCCATGATCCGGCGATACATTAAAAATCCGAATTTATGG 591
||||||||||||||||||||||..|.||..|.||||..||..||.|||||
RBAM_003870__ 545 AAACCAATATTTCCATGATCCGCAGGTATGTAAAAACGCCTGATGTATGG 594
BSNT_00660___ 592 GTTGAAAAAATGAAAAAAGGTTCTGTTACGAATACGGATATCGCTCTCAT 641
||||||||||||.|.|..||....|..||||||||||||.||||.||.||
RBAM_003870__ 595 GTTGAAAAAATGGAGATCGGACACGAAACGAATACGGATGTCGCGCTGAT 644
BSNT_00660___ 642 GTACATTCAAGGAATATGCGATAAAAAGGTGCTGAAGGAAGT---GAAGC 688
|||.|||.|.|||||.||||||||||||.||.|.|||||||| .||
RBAM_003870__ 645 GTATATTAACGGAATTTGCGATAAAAAGCTGATTAAGGAAGTCCGCAA-- 692
BSNT_00660___ 689 TGCGCCTGGAAAAAATAGATATTGACAGTATTTTGGAATCTGGATATATT 738
|||.|||.|..|.||.||.||.|||||.|||.|||||||.||.||.|||
RBAM_003870__ 693 -GCGGCTGAAGCACATTGACATCGACAGCATTCTGGAATCCGGCTACATT 741
BSNT_00660___ 739 GAGCAGCTGATTGAAGATGAAACCTTTACGACGTTTCCGACTATGTATCA 788
||.|||||.||||||||.|...|.|||.|...|||.||.||..|.|||||
RBAM_003870__ 742 GAACAGCTCATTGAAGACGCGCCGTTTTCTGTGTTCCCCACCGTATATCA 791
BSNT_00660___ 789 TACAGAACGCCCTGATGTAGTAGCGGGTAATCTGTTAGAAGGAAGATTCG 838
|||.||.||.||.||.||.||.|||||.||||||.|.||||||.||||.|
RBAM_003870__ 792 TACGGAGCGGCCGGACGTCGTGGCGGGGAATCTGCTGGAAGGACGATTTG 841
BSNT_00660___ 839 CGATTATTGTGGACGGAACACCGTTTGTGCTTATTGCCCCGGCCTTATTT 888
|||||||.|||||||||||.|||||.||.||.||.||.||||||||||||
RBAM_003870__ 842 CGATTATCGTGGACGGAACGCCGTTCGTTCTCATCGCGCCGGCCTTATTT 891
BSNT_00660___ 889 GTCCAGTTTTTTCAGTCTGTTGAGGATTATTATTCGCGTTTTGACATTGC 938
.|.||.||||||||.||||||||||||||||||||.||.|||||.||.||
RBAM_003870__ 892 ATTCAATTTTTTCAATCTGTTGAGGATTATTATTCACGATTTGATATCGC 941
BSNT_00660___ 939 GACAAGTATAAGAATTCTTCGTGTTTTAGTCTTTTTCATTTCGCTTGTGG 988
.||.||.||.||..|.||.||.|||||..||||.||||||||.||.||||
RBAM_003870__ 942 CACTAGCATCAGGGTGCTGCGGGTTTTGATCTTCTTCATTTCACTGGTGG 991
BSNT_00660___ 989 CTCCGGCTGTATACGTGGCAGCCACGACGTTTCATCAAGAAATGATACCG 1038
|.||||...|.||.|||||.||.|||||.|||||.||.||||||||.|||
RBAM_003870__ 992 CGCCGGGGATTTATGTGGCGGCGACGACCTTTCACCAGGAAATGATTCCG 1041
BSNT_00660___ 1039 ACTGAGCTGTTAGTGGTCATTGCGGCCCAGCGGGAAAGTGTCCCGTTTCC 1088
||..|||||.|..|.|||||.||||||||||||||.|..||.|||||.||
RBAM_003870__ 1042 ACGCAGCTGCTGATTGTCATCGCGGCCCAGCGGGAGACGGTGCCGTTCCC 1091
BSNT_00660___ 1089 GGCTGTTGTGGAGGCGCTGACGATGGAGGTTGCTTTTGAGATTCTGAGGG 1138
|||.||..|.||.||||||||.|||||.||.||.|||||||||||.||||
RBAM_003870__ 1092 GGCCGTGATTGAAGCGCTGACAATGGAAGTGGCCTTTGAGATTCTCAGGG 1141
BSNT_00660___ 1139 AAGCGGGATTCAGGCTGCCCCGGGTTGTTGGCTCGGCAGTGTCAATCGTA 1188
|||||||..||.||||.||..|.|||||.|||||.||.||.||.||.||.
RBAM_003870__ 1142 AAGCGGGTGTCCGGCTTCCGAGAGTTGTCGGCTCCGCCGTTTCCATAGTC 1191
BSNT_00660___ 1189 GGCGCGCTCGTAATCGGCCAGGCTGCCGTACAGGCTGGTATCGTCTCTCC 1238
||.|||||.||.|||||||||||.|||||.|||||.||.||.||.||.||
RBAM_003870__ 1192 GGAGCGCTTGTCATCGGCCAGGCCGCCGTGCAGGCCGGCATTGTTTCCCC 1241
BSNT_00660___ 1239 GGCAATGGTGATTATCGTGGCACTCACCGCGATTGCGAGCTTCGCAACCC 1288
.||.|||||.||..||||.||.||.||.||||||||.|||||.||.||||
RBAM_003870__ 1242 AGCCATGGTTATCGTCGTCGCGCTGACGGCGATTGCCAGCTTTGCGACCC 1291
BSNT_00660___ 1289 CGGCGTTTGCAATGGCGATTTCAGCCCGGCTTATTCGGTTTATTTTTCTT 1338
||||.||||..||||||||.||.||.||.||.||.||||||.|.|||.||
RBAM_003870__ 1292 CGGCTTTTGACATGGCGATATCTGCGCGCCTGATCCGGTTTCTCTTTATT 1341
BSNT_00660___ 1339 ATTGCCTCAGCTGTTATGGGTTTTTACGGGCTGATTTTAGGGATCATTAT 1388
.|..|..|.||.||.|||||.|||||||||||||||.|.||.||.||.||
RBAM_003870__ 1342 CTGTCGGCGGCGGTCATGGGATTTTACGGGCTGATTCTGGGCATTATCAT 1391
BSNT_00660___ 1389 GATGTTTGTCCACTTATGCAGTCTTCGTTCATACGGCGTTCCATATATGT 1438
||||||||||||..|.|||.|.||.|||||||.|||..||||.|||||||
RBAM_003870__ 1392 GATGTTTGTCCATCTGTGCGGCCTGCGTTCATTCGGATTTCCGTATATGT 1441
BSNT_00660___ 1439 CGCCGCTTGCACCCTTTTCTTCACAA-----GGCG---TAAAGGACACGC 1480
|.|||||.||.||.|| || |||| |.|||||..|.|
RBAM_003870__ 1442 CCCCGCTCGCTCCTTT--------AACCCCGGGCGGGCTGAAGGATTCCC 1483
BSNT_00660___ 1481 TTTTCCGGGTTCCGTGGTGGGCCGATGAAAAAAGGCC-GGAATCGGTC-A 1528
||.||||.|.|||||..|||||.|||||||||||||| ||||| |.|| .
RBAM_003870__ 1484 TTCTCCGAGCTCCGTTATGGGCGGATGAAAAAAGGCCGGGAAT-GCTCGT 1532
BSNT_00660___ 1529 GCAAGGAAGATAAGGTGCGGCAGGGGCAAGATCAACGCCCAGAGCCGGCC 1578
|| |||||.|.||...|||.||.|||.||.|||||.|.||..|.||||..
RBAM_003870__ 1533 GC-AGGAAAACAACAGGCGCCAAGGGGAACATCAAAGACCGAAACCGGAG 1581
BSNT_00660___ 1579 GCTTCACGAGGAATGGTGAACAAAGATTTGGAAGAAGGGGA---TAA-GA 1624
.|.||..||||||||||.||.||||||.|.|||||.||.|| ||| ||
RBAM_003870__ 1582 ACATCCAGAGGAATGGTTAATAAAGATGTAGAAGAGGGCGACGGTAATGA 1631
BSNT_00660___ 1625 ATGGTACGTAA 1635
|..| ||||||
RBAM_003870__ 1632 AAAG-ACGTAA 1641
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.