Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00650 and RBAM_003830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_00650.1.9828.seq
# -bsequence dna-align/RBAM_003830___yclD2.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00650-RBAM_003830___yclD2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00650-RBAM_003830___yclD2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00650
# 2: RBAM_003830___yclD2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 457
# Identity: 177/457 (38.7%)
# Similarity: 177/457 (38.7%)
# Gaps: 215/457 (47.0%)
# Score: 491.0
#
#
#=======================================
BSNT_00650 1 ATGTCAGACCGTCTCTTTGA---GCTGCTTGACGGGA-GCTGCCTGAATG 46
.||.|.|| |.|.|||| | |||..|.||||||| |..||.|||| .
RBAM_003830__ 1 TTGCCGGA--GGCGCTTT-ACACGCTTTTAGACGGGACGGAGCTTGAA-A 46
BSNT_00650 47 AGAAGCAGCATGAGGCCTTCGTTCTGCAAACAGTATCAGAGGATGGCTGG 96
|.||||||||.||.||.||.||.||.|||.|.||..||.|.||.|||.|.
RBAM_003830__ 47 AAAAGCAGCACGACGCATTTGTGCTCCAATCCGTGACAAAAGAAGGCCGT 96
BSNT_00650 97 CCGCATGCCGCTATGATCAGTGCAGGTGAAATTATCGCGCTGAGCCGAAC 146
|||||.||.||.||||||||.||.||||||||..|.||..|||||.||||
RBAM_003830__ 97 CCGCACGCGGCCATGATCAGCGCCGGTGAAATCGTGGCCGTGAGCAGAAC 146
BSNT_00650 147 TGATATCCGAATCGCTCTGTGGAAAAACACAATGACTTCGGCCAA-CATC 195
..||.||||..||||..|.|||||||||||.|.||| || .|| .|.|
RBAM_003830__ 147 AAATCTCCGGCTCGCCTTATGGAAAAACACGACGAC--CG--TAAGAAGC 192
BSNT_00650 196 CTTC-GCA--CAGGAACAGCACAGTTCACGGCATGG--TGGAAGGGAGCA 240
|||| ||| |.|||..|||.|..||||..||.||| .||| |||||.
RBAM_003830__ 193 CTTCTGCATTCGGGACAAGCTCTTTTCATCGCCTGGCACGGA--GGAGCC 240
BSNT_00650 241 GC-TATTATGTAA------------------------------------- 252
|| |||||.||.|
RBAM_003830__ 241 GCATATTACGTCACATTGGAATGTGAGGCGCTTCCGCCGCTGAAAGAGGC 290
BSNT_00650 252 -------------------------------------------------- 252
RBAM_003830__ 291 GAAACACGAGCGGGAACGGTTCAGCTGCCGCGTGATCACCGTCAAGGAAG 340
BSNT_00650 252 -------------------------------------------------- 252
RBAM_003830__ 341 ATCGGGCGAAATACGCGGATCTGACATCCGGACCGGCCATCCAGCTCCAC 390
BSNT_00650 252 -------------------------------------------------- 252
RBAM_003830__ 391 GAACCGGAAGATGTCTTGAAGAGATGGAGAGAAACACTTGAGGAGTTAAA 440
BSNT_00650 252 ------- 252
RBAM_003830__ 441 ACGATAG 447
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