Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00643 and RBAM_003790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:23
# Commandline: needle
# -asequence dna-align/BSNT_00643___yclA.1.9828.seq
# -bsequence dna-align/RBAM_003790___yclA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00643___yclA-RBAM_003790___yclA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00643___yclA-RBAM_003790___yclA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00643___yclA
# 2: RBAM_003790___yclA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 899
# Identity: 665/899 (74.0%)
# Similarity: 665/899 (74.0%)
# Gaps: 52/899 ( 5.8%)
# Score: 2438.0
#
#
#=======================================
BSNT_00643___ 1 TTGGATATTCGCCAGCCTCGATACTTCATTACCATTGCCCAAGAACAGAA 50
.|||||||.||.||....||.||.|||||.||||||||||||||.|||||
RBAM_003790__ 1 ATGGATATCCGGCAATTGCGTTATTTCATCACCATTGCCCAAGAGCAGAA 50
BSNT_00643___ 51 AATTACGTCCGCAGCCAAAAAGCTTCACATGGCGCAGCCGCCTTTAAGCA 100
|||.|||.|.||.||||||||||||||.|||||.||||||||||||||||
RBAM_003790__ 51 AATCACGACGGCCGCCAAAAAGCTTCATATGGCACAGCCGCCTTTAAGCA 100
BSNT_00643___ 101 GGCAGCTCAAACAGCTGGAGGACGAGCTTGGTGTTGTTCTGTTTGACCGG 150
|.|||||.||||||||.||.||.||..|.||.||..|||||||||||||.
RBAM_003790__ 101 GACAGCTGAAACAGCTCGAAGAAGAATTGGGCGTCATTCTGTTTGACCGC 150
BSNT_00643___ 151 AACAAGAAAAAACAAATGACTCTTACATATGAAGGAGCTGTTTTTCTAAA 200
||.||.||.|||||||||||.|||||||||||||||..|||.|||.|.||
RBAM_003790__ 151 AATAAAAAGAAACAAATGACCCTTACATATGAAGGAAATGTCTTTTTGAA 200
BSNT_00643___ 201 AAGAGCAAAAGAGATTCTGCATAGGTTTGAAGATGCAGTCATTGAGGTAC 250
||||||.|||||||||||.||||.||||||.||.||..|.||.|||||||
RBAM_003790__ 201 AAGAGCGAAAGAGATTCTTCATAAGTTTGAGGACGCTATAATCGAGGTAC 250
BSNT_00643___ 251 AGGAGCTGAAGGAGGAAGTAGCCGGTACACTTGCCGTGGGATCAACGATT 300
|.||||||||||||||.||.|||||.|||||||||||.||.|||||.|||
RBAM_003790__ 251 AAGAGCTGAAGGAGGAGGTGGCCGGGACACTTGCCGTCGGGTCAACCATT 300
BSNT_00643___ 301 TATTGCGCGGCTCTGATGCTTGAAAAAGTAACACAGATCAAAGAGAGATA 350
||.|||||.||.||.||||||||.|||||..|||||||.||||||.|.|.
RBAM_003790__ 301 TACTGCGCCGCGCTCATGCTTGAGAAAGTGTCACAGATGAAAGAGCGGTT 350
BSNT_00643___ 351 CCCCCATCTCACCTTTAATATTTGGGAAAATGAGCCCGCGACACTGTTAG 400
.||.||||||||||||||.|||||||||.|||||||||...|||||.|.|
RBAM_003790__ 351 TCCGCATCTCACCTTTAACATTTGGGAAGATGAGCCCGTCTCACTGCTCG 400
BSNT_00643___ 401 AGCTGCTGGAAAGCCGGCAAATCGATGCGGCGGTCACGACAACACTGATC 450
||||.|||||||.||||||.||.||.||.||.|||||.||.||..||||.
RBAM_003790__ 401 AGCTTCTGGAAACCCGGCAGATTGACGCCGCCGTCACCACCACCTTGATT 450
BSNT_00643___ 451 AAAAGTGAC-ACAGTACAATTCAAGCAGCTTGATGACATTCCATGTGTGC 499
||||..||| .|| |..|||..|||.|||||||.||||||||.|||||..
RBAM_003790__ 451 AAAAACGACGGCA-TTGAATCGAAGGAGCTTGAAGACATTCCGTGTGTAT 499
BSNT_00643___ 500 TCGTGCTTTCAGA----TGAAGCCGGATATCCGTGCGGAGACACCATTAA 545
|.|||||.||.|| |.||..|| .|.||||||.||.||.|||||
RBAM_003790__ 500 TGGTGCTGTCCGAGCATTCAAAACG----ACTGTGCGGTGAAACGATTAA 545
BSNT_00643___ 546 GATGGAGGACATTCCTTCATTTCCGCTGATCCTGCTGCGGCCTGTCAACG 595
..||.|.|||||..|.||.||.||..|||||||..||||..|.|||||.|
RBAM_003790__ 546 ACTGAATGACATCGCCTCTTTGCCTTTGATCCTTTTGCGCACCGTCAATG 595
BSNT_00643___ 596 GAAAAGGCGTCTATAATCAGGTCATGAATGAATTTCATCGTTTGAAC--- 642
|||.|||.||.|||.|.||.|||.| ..||.|| |.|||||
RBAM_003790__ 596 GAAGAGGTGTGTATGACCAAGTCCT---CCAAGTT-----TGTGAACAGT 637
BSNT_00643___ 643 -----CTGGAGCCGCGCATTGTTTGTGAATGCCACGACTCTGCAACTTTG 687
||.||.|..|...||||.|||||||||||.|||||.||.|| |
RBAM_003790__ 638 ACGGTCTCGACCTTCAGGTTGTCTGTGAATGCCATGACTCCGCGAC---G 684
BSNT_00643___ 688 CTC---AGCCTCGTGTCATCCGGATTCGGCGCGTCTATTTTGCCTGTCAC 734
||| ||||||||.|||||.||.||||||||..|.|||.|||||.|.||
RBAM_003790__ 685 CTCTTGAGCCTCGTATCATCAGGGTTCGGCGCCACAATTCTGCCTTTGAC 734
BSNT_00643___ 735 AATGATTCCCGTTCATATGAGAAATCACGTTCACACCGTCCA-------- 776
.|||||||||||.|||||| |||||.|| .|||.|
RBAM_003790__ 735 GATGATTCCCGTCCATATG--------CGTTCGCA-TGTCAAAACGGTTA 775
BSNT_00643___ 777 -TATCGAAAATAATCCCTTCATTATGACACCGGCTGTCATGTGGAGAACG 825
.||||||.|.||.||.||..|.|||||||||||.|||||.|||||||..
RBAM_003790__ 776 TCATCGAAGACAACCCGTTTGTCATGACACCGGCCGTCATCTGGAGAAAA 825
BSNT_00643___ 826 GACAGTTATTTGCCTAAACCGGCACAG-CAATTTTTGGATTTATTTTAA 873
|||||.|||.||||.||.|||| .||| ||.||||||||.|||||||.|
RBAM_003790__ 826 GACAGCTATCTGCCGAAGCCGG-TCAGACAGTTTTTGGAATTATTTTGA 873
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