Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00633 and RBAM_003730
See
Amino acid alignment /
Visit
BSNT_00633 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_00633___ycxD.1.9828.seq
# -bsequence dna-align/RBAM_003730___ycxD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00633___ycxD-RBAM_003730___ycxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00633___ycxD-RBAM_003730___ycxD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00633___ycxD
# 2: RBAM_003730___ycxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1366
# Identity: 961/1366 (70.4%)
# Similarity: 961/1366 (70.4%)
# Gaps: 86/1366 ( 6.3%)
# Score: 3248.5
#
#
#=======================================
BSNT_00633___ 1 ATGGAGAAATATATGAGTCTATTAA--TGAGGATAGA---GGAGA---TG 42
|||||.||.|||||| || |||.|||||| ||||| |.
RBAM_003730__ 1 ATGGAAAAGTATATG--------AACGTGATGATAGAAGTGGAGAGTCTC 42
BSNT_00633___ 43 ATGCAAAGCACCGCCTATCAAGAAGGAGACAGGCTTCCATCTATCCGTCA 92
||..||.||..|.|.|.|||.|||||.|...||||.||.||||||.|.||
RBAM_003730__ 43 ATTGAAGGCGGCACTTTTCAGGAAGGGGCGCGGCTGCCTTCTATCAGGCA 92
BSNT_00633___ 93 GCTGTCCGCCCGCTACCAAGTCAGCAAAAGCACAGTGATCCGCGCGCTGC 142
||||.|||..||.|..||.|||||.||||||||.||.|||||.|||||.|
RBAM_003730__ 93 GCTGGCCGAGCGTTTTCACGTCAGTAAAAGCACCGTCATCCGTGCGCTTC 142
BSNT_00633___ 143 AGGAGCTGGAAAAGCGCCACCTTATCTATTCTGTTCCGAAAAGCGGCTAT 192
|||||||.|||||.||.|||.||||.|||.|.||.||||||||||||||.
RBAM_003730__ 143 AGGAGCTTGAAAAACGGCACATTATTTATGCCGTGCCGAAAAGCGGCTAC 192
BSNT_00633___ 193 TATATTGTGAAAAA-GACAGGGAAATCAAGAAGCGGG--CAGCCTGGCCC 239
|||.||.|.||||| |||| |||...||.||||.| ||..|.||...
RBAM_003730__ 193 TATCTTATTAAAAATGACA---AAAAGCAGGAGCGAGAACAAACAGGTAT 239
BSNT_00633___ 240 CATCGACTTTGCCACATCTGCGCCGGATCCAGATGTGTTTCCGTATCTTG 289
|||.||.|||||..|.||.||||||||.||.|||.|.||||||||.|..|
RBAM_003730__ 240 CATTGATTTTGCAGCCTCGGCGCCGGACCCTGATATTTTTCCGTACCGCG 289
BSNT_00633___ 290 ATTTTCAGCACTGTATCAACAAAGCGATTGATACATACAAAAACGATTTG 339
|.||||||||.||.|||||||||||.|||||||..||.|||||.||||||
RBAM_003730__ 290 ACTTTCAGCATTGCATCAACAAAGCCATTGATATGTATAAAAATGATTTG 339
BSNT_00633___ 340 TTTATTTATGGGACGCCAAAGGGGCTTCCCTCACTCATCCGCGTACTCCG 389
||.|||||.||.|||||..||||||||||.||..|.|||||.||.||.|.
RBAM_003730__ 340 TTCATTTACGGCACGCCGCAGGGGCTTCCGTCTTTAATCCGGGTGCTTCA 389
BSNT_00633___ 390 AAAGCTCTTGGCCACTCAACAGGTATTTGCGGATGAACGGCATATTTTCA 439
.|.|||.||..||..|.|.|||||||||||..|.||.|||.|.|||||.|
RBAM_003730__ 390 GACGCTGTTATCCGATTATCAGGTATTTGCAAAAGAGCGGAACATTTTTA 439
BSNT_00633___ 440 TTACATCAGGTGTCCAGCAGGCGTTATCCTTGCTTTGTGCCATGCCGTTC 489
|.||.||.|||||.|||||||||||||||.||||.|.|...||||||||.
RBAM_003730__ 440 TCACCTCGGGTGTGCAGCAGGCGTTATCCCTGCTGTCTCTGATGCCGTTT 489
BSNT_00633___ 490 CCAAATGGGAAAGAGAAGATCGCCATTGAACAGCCGGGCTACCATTTGAT 539
||.||.||.|||.|||||||....||.||||||||||||||.|||.||||
RBAM_003730__ 490 CCGAACGGAAAAAAGAAGATTTTAATCGAACAGCCGGGCTATCATCTGAT 539
BSNT_00633___ 540 GGTCGAACAGCTTGAGACGCTTGGGATTCCCGCTATCGGGGTGAAACGAA 589
|||.||.||||||||..||||..|..|||||||...|||..|.|||||.|
RBAM_003730__ 540 GGTGGAGCAGCTTGAAGCGCTGCGCCTTCCCGCCTGCGGCATTAAACGGA 589
BSNT_00633___ 590 CGGAAGAAGGGCTTGATATAGCCGAGGTTGAGCGGTTATTTCAAACAGAA 639
|||..||.|||||||||||.||.||.||.||||||.|.|||||.||.||.
RBAM_003730__ 590 CGGCTGAGGGGCTTGATATGGCGGAAGTCGAGCGGCTGTTTCAGACGGAG 639
BSNT_00633___ 640 TCGATTAAATTTTTTTATACGATGCCGCGCTTCCATAACCCGCTTGGCTA 689
...|||||.||||||||.||||||||.||.||.|||||.|||||.|||..
RBAM_003730__ 640 GGAATTAAGTTTTTTTACACGATGCCCCGATTTCATAATCCGCTCGGCAG 689
BSNT_00633___ 690 CTCATTGTCAGAGCGTGATAAACAGGAGCTTGTGAGACTGGCAGAAGCGT 739
|||..||.||||..|..|.||||..||||||||..||.|.||.||.||||
RBAM_003730__ 690 CTCTCTGACAGAATGGCAAAAACGAGAGCTTGTCCGATTAGCGGAGGCGT 739
BSNT_00633___ 740 ATGATGTCTATCTCGTTGAGGATGATTACCTCGGTGATCTGGAGGAAAAT 789
||||.||.|||.|.|||||||||||||.|||.||.|||.|.|||||.|||
RBAM_003730__ 740 ATGACGTTTATTTGGTTGAGGATGATTTCCTAGGAGATTTAGAGGACAAT 789
BSNT_00633___ 790 AAAAAGGCAGATCCGCTGTACGCATATGATCTGTCCTCACATGTCATCTA 839
.|.||||||||.|||||||||||.||.||||||||.||.|..||.||.||
RBAM_003730__ 790 CAGAAGGCAGACCCGCTGTACGCCTACGATCTGTCTTCCCGCGTGATTTA 839
BSNT_00633___ 840 TTTGAAAAGCTTCTCGAAAATGATGTTCCCCGGCCTTCGCGTGGGGGCGG 889
||||||||||||.|||||||||||.||.||.||.||.||.||.||.||||
RBAM_003730__ 840 TTTGAAAAGCTTTTCGAAAATGATTTTTCCGGGGCTGCGTGTTGGAGCGG 889
BSNT_00633___ 890 CTGTTTTGCCCGAAGCGCTGACTGACACG---TTCTATGCGTACAAAAAG 936
||||..|.||.||..||||| |.|.|| |||.||.||||.||||||
RBAM_003730__ 890 CTGTGCTCCCGGATTCGCTG---GCCCCGGTTTTCCATACGTATAAAAAG 936
BSNT_00633___ 937 CTGAACGACATCGACTGTTCGATGATTTCTCAAGCGG-CATTGGAGATTT 985
||||.|||.|||||||||||||||||.||.||||||| |.|||.|| |.|
RBAM_003730__ 937 CTGAGCGATATCGACTGTTCGATGATATCCCAAGCGGCCCTTGAAG-TGT 985
BSNT_00633___ 986 ACCTGAAAAGCGGTATGTACGGCAGGCATAAGGAGAAAATCAGAGATTCT 1035
|..|.||||||||.||||.|...||||||||.||.||||||.|.|..|||
RBAM_003730__ 986 ATATCAAAAGCGGCATGTTCAAAAGGCATAAAGAAAAAATCCGGGCCTCT 1035
BSNT_00633___ 1036 TATA-AAGAGCGGTC---GCTGAAGCTTCATCAAGCCATTCAAACACACA 1081
||.| ||.| ||.|| ||| |||.|| ||||.|
RBAM_003730__ 1036 TACAGAACA-CGTTCCGAGCT---GCTCCA-----------AAACGC--- 1067
BSNT_00633___ 1082 GGCAGCTG--GGAAGCGGCCGCTTTACGTTCTCCAGCGGGCAGGC-ACCC 1128
|||| |||....|.||.||| |||| |..|.|| |.|.
RBAM_003730__ 1068 ----GCTGCAGGAGTACGACGGTTT---TTCT------GTAAAGCAAACG 1104
BSNT_00633___ 1129 TGCATGCACACCCACCTGGTGCTTCCTCAGGA------TCTGCCCGCCTC 1172
|..||.||.|||||.||.||||| ||| .||..||||.||
RBAM_003730__ 1105 TCGATCCATACCCATCTCGTGCT------GGAGAAAAGCCTTTCCGCTTC 1148
BSNT_00633___ 1173 AAGAGTGATTCATAGACTGAAAAAACAAGGGGTTCTCCTTGAGGCGATAG 1222
||||||..|.||..|.||||||...|||||.||.||..|.|||.||||.|
RBAM_003730__ 1149 AAGAGTTGTGCAGCGCCTGAAAGCGCAAGGCGTGCTGGTGGAGCCGATTG 1198
BSNT_00633___ 1223 ACCGTCATTATTTATCAGATTATCAGAAAGAAAATCTATTAAAAATCAAT 1272
||.|.|||||..||||.||||.||.||||||||||.|..|.|||.||||.
RBAM_003730__ 1199 ACAGCCATTACCTATCGGATTTTCCGAAAGAAAATATCATCAAACTCAAC 1248
BSNT_00633___ 1273 ATTTCCAATGTGAAAACGGAAGATATTGAGCGCGGTGTCAAGCTGTTGAT 1322
.|.|||||.||.||.||.|..|||||...|||.||..||||..||.|||.
RBAM_003730__ 1249 GTGTCCAACGTCAAGACAGGGGATATCACGCGAGGCATCAAAATGCTGAC 1298
BSNT_00633___ 1323 GAGCCAT---TTATAA 1335
| .|| ||||||
RBAM_003730__ 1299 G---GATTGCTTATAA 1311
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.