Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00627 and RBAM_003690

See Amino acid alignment / Visit BSNT_00627 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:22
# Commandline: needle
#    -asequence dna-align/BSNT_00627___srfAD.1.9828.seq
#    -bsequence dna-align/RBAM_003690___srfAD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00627___srfAD-RBAM_003690___srfAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00627___srfAD-RBAM_003690___srfAD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00627___srfAD
# 2: RBAM_003690___srfAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity:     558/754 (74.0%)
# Similarity:   558/754 (74.0%)
# Gaps:          47/754 ( 6.2%)
# Score: 1991.5
# 
#
#=======================================

BSNT_00627___      1 ATGAGCCAACTCTTCAAATCATTTGATGCGTCGGAAAAAACGCAGCTCAT     50
                     |||..|||.|||||.|||||.||.|||.|..|.|||||||||||||||||
RBAM_003690__      1 ATGGTCCAGCTCTTTAAATCGTTCGATACCACAGAAAAAACGCAGCTCAT     50

BSNT_00627___     51 CTGTTTTCCGTTTGCTGGCGGCTACTCGGCGTCGTTTCGCCCTCTCCATG    100
                     ||||||||||||.||.||.|||||.||.||.||.||.|||||.|||||..
RBAM_003690__     51 CTGTTTTCCGTTCGCAGGAGGCTATTCCGCATCATTCCGCCCGCTCCACA    100

BSNT_00627___    101 CTTTTTTGCAGGGGGAGTGCGAGATGCTCGCTGCCGAGCCGCCGGGACAC    150
                     |.|.|.|.||.||.|||||.||||||||.||.||.||.||||||||||||
RBAM_003690__    101 CCTATCTTCAAGGTGAGTGTGAGATGCTTGCCGCGGAACCGCCGGGACAC    150

BSNT_00627___    151 GGCACGAATCAAACGTCAGCCATTGAGGATCTCGAAGAGC-TGACAGATT    199
                     ||.||.|||||||.|||.|||.||||||||.|.|||.||| ||.||| ||
RBAM_003690__    151 GGAACAAATCAAATGTCCGCCGTTGAGGATTTTGAACAGCTTGTCAG-TT    199

BSNT_00627___    200 TGTACAAGCAAGAACTGAACCTTCGCCCTGATCGGCCGTTTGTGCTGTTC    249
                     |.||||||||.||..||||.||.|..||.||.||.|||||||||||||||
RBAM_003690__    200 TATACAAGCAGGAGTTGAATCTCCATCCCGACCGCCCGTTTGTGCTGTTC    249

BSNT_00627___    250 GGACACAGTATGGGCGGAATGATCACCTTCAGGCTGGCGCAAAAGCTTGA    299
                     ||.|||||||||||.||.|||.||.|.||||||||||||||||||||.||
RBAM_003690__    250 GGCCACAGTATGGGAGGCATGGTCGCTTTCAGGCTGGCGCAAAAGCTGGA    299

BSNT_00627___    300 GCGTGAGGGCATCTTTCCGCAGGCGGTTATCATTTCTGCAATCCAGCCGC    349
                     |||.||||||||.|..||||||||.||.|||||.||.||.||.|||||||
RBAM_003690__    300 GCGGGAGGGCATTTACCCGCAGGCCGTGATCATCTCAGCCATTCAGCCGC    349

BSNT_00627___    350 CTCATATTCAGCGGAAGAAAGTGTCCCACCTGCCTGATGATCAGTTTCTC    399
                     |.|||.|..|..||||.||||||||.||.||...||||||..|.||||||
RBAM_003690__    350 CGCATGTGGAAAGGAAAAAAGTGTCTCATCTTGATGATGAAAAATTTCTC    399

BSNT_00627___    400 GATCATATTATCCAATTAGGCGGAATGCCCGCA-GAGCTTGTTGAAAATA    448
                     |..|||||||||.|..|.||||||||| ||||| |||.|.||.||.||||
RBAM_003690__    400 GCCCATATTATCGAGCTTGGCGGAATG-CCGCAGGAGTTAGTGGAGAATA    448

BSNT_00627___    449 AGGAGGTCATGTCCTTTTTCCTGCCTTCTTTCCGATCAGATTACCGGGCT    498
                     |||||||||||||.||||||||||||||||||.||||.||.|||||.||.
RBAM_003690__    449 AGGAGGTCATGTCATTTTTCCTGCCTTCTTTCAGATCCGACTACCGCGCG    498

BSNT_00627___    499 CTTGAACAATTTGAGCTT---TACGATCTG--GCCCAGATC---CAGTCG    540
                     ||||||       |||||   |.|| ||||  .|.||.|||   ||.||.
RBAM_003690__    499 CTTGAA-------AGCTTCCGTCCG-TCTGATTCTCACATCATTCAATCA    540

BSNT_00627___    541 CCTGTTCATGTCTTTAACGGGCTTGATGATAAAAAATGCATACGAGATGC    590
                     ||.||.|||.|.||||||||||...|.|||||||||||.||...||||||
RBAM_003690__    541 CCCGTCCATATATTTAACGGGCGGAAAGATAAAAAATGTATCAAAGATGC    590

BSNT_00627___    591 GGAAGGCTGGAAGAAGTGGGCAAAAGAC-ATCAC--ATTCCATCAATTTG    637
                     |||.||.|||||.||.|||||   .||| |||.|  |||.|||.|.||| 
RBAM_003690__    591 GGACGGATGGAAAAAATGGGC---CGACAATCCCGTATTTCATGAGTTT-    636

BSNT_00627___    638 ACGGA-GGACACATGTTCCTGCT--GTCACAAACGGAAGAAGTCGCAGAA    684
                     .|||| ||.|||||||||.|..|  ||  .||||.|||.||||.||.|||
RBAM_003690__    637 TCGGACGGCCACATGTTCATATTAAGT--GAAACTGAAAAAGTGGCGGAA    684

BSNT_00627___    685 CGGATTTTTGCGATCTTGAATCAGCATCCGATCATT------CAACCGTG    728
                     ||.||.|.||.|||..|.|| |||     ||.||.|      |||..||.
RBAM_003690__    685 CGAATCTATGAGATTATTAA-CAG-----GAGCACTGCAGGCCAATTGTT    728

BSNT_00627___    729 A---    729
                     |   
RBAM_003690__    729 ATAG    732


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00627 and RBAM_003690

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
