Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00610 and RBAM_003610

See Amino acid alignment / Visit BSNT_00610 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:21
# Commandline: needle
#    -asequence dna-align/BSNT_00610___nucA.1.9828.seq
#    -bsequence dna-align/RBAM_003610___nucA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00610___nucA-RBAM_003610___nucA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00610___nucA-RBAM_003610___nucA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00610___nucA
# 2: RBAM_003610___nucA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 459
# Identity:     325/459 (70.8%)
# Similarity:   325/459 (70.8%)
# Gaps:          30/459 ( 6.5%)
# Score: 1061.0
# 
#
#=======================================

BSNT_00610___      1 GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCAT     50
                     .||||          .||||  |||||.|..|.||.||.||..|..||||
RBAM_003610__      1 TTGAA----------AACAT--TAAAAGCACTGCTGCTTGTTCTTATCAT     38

BSNT_00610___     51 CATAGCAGCTGCAGCTGTCGG-CCTGATAAAAGGAGACTTTTTCTCAGCT     99
                     |||.||.|..|||| |..||| ||||||.||.||.||..|||||||||.|
RBAM_003610__     39 CATTGCCGGAGCAG-TCGCGGCCCTGATCAAGGGTGATCTTTTCTCAGAT     87

BSNT_00610___    100 ---GATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTT    146
                        ||.|  |.|.||| |||.|.||..||.||.||..||..||||...||
RBAM_003610__     88 AACGAGC--AGACCGT-TCAGAAGAGTGATTACGACAAAGTAATCTTATT    134

BSNT_00610___    147 CCCATCTGACCGGTATCCCGAAACTGCCAAGCATATTAAGGATGCGATAA    196
                     .||.||.||.||.|||||.|||||.||.||||||||||||||.|||||||
RBAM_003610__    135 TCCGTCCGATCGATATCCGGAAACAGCAAAGCATATTAAGGACGCGATAA    184

BSNT_00610___    197 ATGAGGGGCACT-CAG-AGGTGTGCACTATTGACAGAGACGGAG--CTGA    242
                     |.||.||.||.| ||| |  |.|||||.||||||||||||||||  |..|
RBAM_003610__    185 AAGAAGGACATTCCAGCA--TATGCACCATTGACAGAGACGGAGTACATA    232

BSNT_00610___    243 AGAACGCCGCGAGCAATC-ATTAAAGGACGTACCTTCCAAAAAGGGGTAT    291
                     ||  ||.||.|||||||| .||||| .|.||.|||..|||||.|||.||.
RBAM_003610__    233 AG--CGGCGTGAGCAATCTCTTAAA-CATGTGCCTGTCAAAACGGGATAC    279

BSNT_00610___    292 GACAGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGGTGAGGGAGC    341
                     ||.||.|||||||||||.|||||..|.||.|||.|.|||||..|....||
RBAM_003610__    280 GATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGGAAACAACGC    329

BSNT_00610___    342 TTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGG    391
                     .||.||||||||.||||||||.||.||||||||||||||.||||||||||
RBAM_003610__    330 CTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGG    379

BSNT_00610___    392 TCGGGCATCAGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACA    441
                     ||||.||.|||||||||.||.|.||.|||||.||.|..||.|||||.|.|
RBAM_003610__    380 TCGGACACCAGCTTACCAATGATCCCGACGGAACGAGAGTATTATTTAAA    429

BSNT_00610___    442 ATTCAGTAA    450
                     ||..|||||
RBAM_003610__    430 ATCAAGTAA    438


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