Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00609 and RBAM_003600

See Amino acid alignment / Visit BSNT_00609 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:21
# Commandline: needle
#    -asequence dna-align/BSNT_00609___nin.1.9828.seq
#    -bsequence dna-align/RBAM_003600___nin.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00609___nin-RBAM_003600___nin.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00609___nin-RBAM_003600___nin.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00609___nin
# 2: RBAM_003600___nin
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 412
# Identity:     295/412 (71.6%)
# Similarity:   295/412 (71.6%)
# Gaps:          26/412 ( 6.3%)
# Score: 1041.0
# 
#
#=======================================

BSNT_00609___      1 TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATT     50
                     |||||.|||||||||||.|||||||||||..|.|||||.|||||||||||
RBAM_003600__      1 TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATT     50

BSNT_00609___     51 TACTGTATTTCAAAAGGATTCTACACCTCCTATAATGGATTGGACTGACG    100
                     |||..|.||.|||||.|||||...|||.|||.|.||.||||||||.||.|
RBAM_003600__     51 TACAATCTTCCAAAAAGATTCAGAACCGCCTGTTATCGATTGGACCGATG    100

BSNT_00609___    101 AAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAG    150
                     ||||.|||||||||||||||.|.|..||.|||||.||..|||||||||||
RBAM_003600__    101 AAGCCATTGAAAAAGGATATGCGGAAGCTGACGGGGCTGTTTCATTTGAG    150

BSNT_00609___    151 GCACAGCGAAATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCA--    198
                     |||..|.|||||||.|.|||.|||||..||.|..|.||.||||   ||  
RBAM_003600__    151 GCAAGGAGAAATACGAGGGCATTTATCGTTCTCAGGCTTAACA---CAAG    197

BSNT_00609___    199 -GAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTTCA---TG    244
                      |||.|.|||...|||||.||.|||||||.|||||||||.|||.|   ||
RBAM_003600__    198 TGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTTGAGGCTG    247

BSNT_00609___    245 TCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCC    294
                     |   |.||.|.||||||.|.|||||||||.|.|||||.|||.|.||.|.|
RBAM_003600__    248 T---AAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTC    294

BSNT_00609___    295 TTTGATCTGCCTAAAGG-------AGACTATCAATTGACATGCTGGACTG    337
                     |||.||.|.||.|||||       ||.|       |.||.||.|...|.|
RBAM_003600__    295 TTTCATATTCCGAAAGGCCGATACAGCC-------TTACCTGTTATTCAG    337

BSNT_00609___    338 TGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCT    387
                     ||||.||.|||||.||.|||.|.||.|||||.||.||||||||||||||.
RBAM_003600__    338 TGCCTGCCGAAATATCCGATCTTCATGCCGATACGTATATTATTGATGCA    387

BSNT_00609___    388 GTTTCTGTGTAA    399
                     |...|..|||||
RBAM_003600__    388 GCCGCAATGTAA    399


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