Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00601 and RBAM_003570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00601___yckC.1.9828.seq
# -bsequence dna-align/RBAM_003570___yckC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00601___yckC-RBAM_003570___yckC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00601___yckC-RBAM_003570___yckC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00601___yckC
# 2: RBAM_003570___yckC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 487
# Identity: 321/487 (65.9%)
# Similarity: 321/487 (65.9%)
# Gaps: 83/487 (17.0%)
# Score: 1032.0
#
#
#=======================================
BSNT_00601___ 1 ATGAATATTTACAAACCAGCCGGATTTTGGATCAGACTTGGAGCTGCATT 50
|||||||||||||.|||.||.|||||||||||||||.|.|||||.| |
RBAM_003570__ 1 ATGAATATTTACAGACCGGCGGGATTTTGGATCAGATTGGGAGCCG---T 47
BSNT_00601___ 51 GTTA---GACTACATTA--TAGTCTCCGTGCCGCTTTTGCTGATCTATT- 94
|.|| ||||| .||| ||.| ||.||||| ||||..||| ||||
RBAM_003570__ 48 GGTACTCGACTA-TTTAATTACT-TCAGTGCC---TTTGGCGAT-TATTT 91
BSNT_00601___ 95 ---GGCTGATTACAGGAAAAGACCCAAACGACAGC---ATGTT---CATC 135
.||||...|||||||||||.||.||.||.||| |||.| ||||
RBAM_003570__ 92 TTATGCTGGCAACAGGAAAAGATCCGAATGAGAGCACAATGATCAGCATC 141
BSNT_00601___ 136 AGTTTGGTTGTTCTGCTGTATTCTATTTTGCTGCCGGTGTTTTGGCACGG 185
|.||||..| ||.|||.||||||||||.||.||.|..|||.||||
RBAM_003570__ 142 ATTTTGACT------CTTTATGCTATTTTGCTCCCTGTATACTGGAACGG 185
BSNT_00601___ 186 TTATCTTATCGGAAAAAGGATCTGCGGAATCAGAATCGTAAAAAAAGAAG 235
||||.|||||||.||||.|||||||||.|||.|.|||||.||||||||.|
RBAM_003570__ 186 TTATGTTATCGGCAAAAAGATCTGCGGTATCCGCATCGTCAAAAAAGACG 235
BSNT_00601___ 236 GATCACAAGTCAGCCTGT-TAACAATGTTTTTACGGGTTATTGTAGCCGG 284
|..|.||.|| ||.||.| |.||.|||.||||..|.||..||||.|.|||
RBAM_003570__ 236 GCACTCAGGT-AGGCTTTCTCACTATGATTTTGAGAGTGCTTGTGGGCGG 284
BSNT_00601___ 285 CCTGGTTTACTTTATA-------ACCTTCGGACTCGGCTTGATCGCCAGC 327
|||| .|||| ||.||.|||.|||||.||||||..|||
RBAM_003570__ 285 CCTG-------ATATATGGCGTGACGTTTGGAATCGGCGTGATCGTGAGC 327
BSNT_00601___ 328 CTG-ATTCTGATTGCCG---TACGAGAAGACAAACGGACCCTGCATGATT 373
| |||| ||.|.|| |..||||||||||||||.|..|.||.||||
RBAM_003570__ 328 --GCATTC--ATGGTCGGAATGAGAGAAGACAAACGGTCAATCCACGATT 373
BSNT_00601___ 374 TAATCGCGGGAACATATGTCACTTATGCGACACCAGGTGAAGAAGAACTT 423
|..|.||.|||||.||||||||.||.|||
RBAM_003570__ 374 TTGTAGCAGGAACGTATGTCACATACGCG--------------------- 402
BSNT_00601___ 424 AATACT----GACGAAGAGATTAGAAAGAGCGAATAA 456
|| ||||||..||||..|||||||||||||
RBAM_003570__ 403 ----CTGCCGGACGAATCGATTGAAAAGAGCGAATAA 435
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