Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00584 and RBAM_003540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00584___nasA.1.9828.seq
# -bsequence dna-align/RBAM_003540___nasA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00584___nasA-RBAM_003540___nasA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00584___nasA-RBAM_003540___nasA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00584___nasA
# 2: RBAM_003540___nasA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1209
# Identity: 993/1209 (82.1%)
# Similarity: 993/1209 (82.1%)
# Gaps: 6/1209 ( 0.5%)
# Score: 4084.0
#
#
#=======================================
BSNT_00584___ 1 ATGAAGCTGTCGGAACTGAAAACTAGCGGTCATCCACTCACGTTGCTCTG 50
|||||||||||||||.|.|||||.|||||||||||.|||||..|||||||
RBAM_003540__ 1 ATGAAGCTGTCGGAATTAAAAACAAGCGGTCATCCGCTCACTCTGCTCTG 50
BSNT_00584___ 51 TTCCTTTTTATACTTTGATGTCAGTTTTATGATATGGGTTATGCTTGGGG 100
||||||.|||||.||||||||.|||||||||||.|||||.|||||.||||
RBAM_003540__ 51 TTCCTTCTTATATTTTGATGTGAGTTTTATGATTTGGGTAATGCTGGGGG 100
BSNT_00584___ 101 CGCTGGGTGTTTATATTTCTCAGGATTTTGGCCTGTCTCCTTTTGAGAAA 150
||||.||.||||||||||||||||||||.||..|.|||.|||||||.|||
RBAM_003540__ 101 CGCTCGGCGTTTATATTTCTCAGGATTTCGGGTTATCTTCTTTTGAAAAA 150
BSNT_00584___ 151 GGGCTTGTCGTAGCTGTGCCGATTTTATCTGGATCTGTGTTTCGTATCAT 200
|||.|||||||.|||.|||||||.|||||.||||||||||||||.|||||
RBAM_003540__ 151 GGGTTTGTCGTGGCTCTGCCGATCTTATCAGGATCTGTGTTTCGGATCAT 200
BSNT_00584___ 201 TCTTGGTATTTTAACGGACAGAATCGGACCGAAAAAAACGGCAGTGATCG 250
|.|.|||.|.|||||||||||.|||||.|||||.|||||.||.|||||||
RBAM_003540__ 201 TTTAGGTGTGTTAACGGACAGGATCGGGCCGAAGAAAACAGCCGTGATCG 250
BSNT_00584___ 251 GGATGCTGGTGACGATGATTCCGCTGCTTTGGGGGACATTCGGCGGCCGT 300
||||||||.|.||||||||.|||||||||||||||.||||||||||||||
RBAM_003540__ 251 GGATGCTGATCACGATGATCCCGCTGCTTTGGGGGGCATTCGGCGGCCGT 300
BSNT_00584___ 301 TCCCTGACTGAGCTGTATGCCATCGGGATTCTGCTTGGCGTGGCGGGAGC 350
||..||||||||||||.|||.|||||.||||||||.|||||.|||||.||
RBAM_003540__ 301 TCTTTGACTGAGCTGTTTGCGATCGGCATTCTGCTGGGCGTAGCGGGCGC 350
BSNT_00584___ 351 AAGCTTTGCTGTAGCGCTGCCTATGGCCAGCCGATGGTATCCGCCTCATT 400
|||.||||||||.|||||.||.|||||.|||||.||||||||||||||.|
RBAM_003540__ 351 AAGTTTTGCTGTTGCGCTTCCGATGGCGAGCCGGTGGTATCCGCCTCACT 400
BSNT_00584___ 401 TGCAGGGGCTTGCGATGGGGATTGCCGGAGCGGGGAACAGCGGCACGTTG 450
||||||||||||||||||||||.||.||.||.||.|||||||||||.|||
RBAM_003540__ 401 TGCAGGGGCTTGCGATGGGGATAGCAGGTGCCGGCAACAGCGGCACTTTG 450
BSNT_00584___ 451 TTTGCAACCCTGTTTGGCCCTCGTCTGGCGGAGCAGTTCGGCTGGCACAT 500
|||||.||..||||.|||||.||.||.|||||.|||||.||.|||||||.
RBAM_003540__ 451 TTTGCGACATTGTTCGGCCCCCGCCTTGCGGAACAGTTTGGGTGGCACAG 500
BSNT_00584___ 501 TGTCATGGGAATTGCGCTAATTCCATTATTGATCGTCTTTATTCTTTTTG 550
|||.||||||||||||||..||||.||..|||||||.|||||.||.||
RBAM_003540__ 501 TGTAATGGGAATTGCGCTTTTTCCGTTGATGATCGTTTTTATACTGTT-- 548
BSNT_00584___ 551 TATC--CATGGCAAAGGATTCCCCTGCACAGCCGTCTCCCCAGCCGCTCA 598
|||| ||||||.|||||.||.|||||||||||..|.||.||||||||.|
RBAM_003540__ 549 TATCGTCATGGCGAAGGACTCTCCTGCACAGCCCGCACCGCAGCCGCTTA 598
BSNT_00584___ 599 AAAGCTATCTGCATGTGTTCGGGCAAAAGGAAACATGGTTTTTCTGCCTG 648
|||.|||.||.||.||||||.||||.|||||||||||||.||||||.||.
RBAM_003540__ 599 AAAACTACCTTCACGTGTTCAGGCAGAAGGAAACATGGTGTTTCTGTCTT 648
BSNT_00584___ 649 CTGTACAGCGTCACATTTGGCGGATTTGTCGGGCTCTCAAGCTTTTTATC 698
||||||.|||||||.||.||.||.|||||.||..|.|||||.|||||..|
RBAM_003540__ 649 CTGTACGGCGTCACTTTCGGAGGTTTTGTGGGATTATCAAGTTTTTTGGC 698
BSNT_00584___ 699 TATTTTCTTTGTTGATCAATACCAGCTGTCAAAAATTCACGCAGGGGACT 748
.|||||.||.|||||||||||.||..||||||||||.||.||.||.||.|
RBAM_003540__ 699 CATTTTTTTCGTTGATCAATATCAATTGTCAAAAATCCATGCCGGTGATT 748
BSNT_00584___ 749 TCGTTACATTATGTGTGGCGGCGGGGAGCTTTTTCCGGCCTGTCGGGGGC 798
||||.|||.|||||||.||.|||||.||.|||||.||.||||..||.|||
RBAM_003540__ 749 TCGTCACAATATGTGTCGCAGCGGGCAGTTTTTTTCGCCCTGCAGGAGGC 798
BSNT_00584___ 799 TTGATTTCGGATCGTGTCGGCGGCACGAAAGTTCTTTCTGTACTGTTTGT 848
|.||||||.||.||||..||.||..||||||||||..|||||||||||||
RBAM_003540__ 799 TGGATTTCAGACCGTGCGGGAGGTGCGAAAGTTCTGGCTGTACTGTTTGT 848
BSNT_00584___ 849 CATCGTGGCACTGTGTATGGCCGGAGTCAGCAGCCTGCCATCTCTTTCAA 898
|||||.|||.|||||||||||.|||||||||||||||||..|.|||||||
RBAM_003540__ 849 CATCGCGGCTCTGTGTATGGCGGGAGTCAGCAGCCTGCCTCCGCTTTCAA 898
BSNT_00584___ 899 TGGTTATTGTTCTATTGTTTGTCGGAATGATGGGGCTCGGAATGGGAAAC 948
.|||.||.|||||..|||||.||||||||||||.||||||.|||||.|||
RBAM_003540__ 899 CGGTGATCGTTCTGCTGTTTATCGGAATGATGGCGCTCGGTATGGGCAAC 948
BSNT_00584___ 949 GGCGCAGTATTCCAGCTCGTGCCGCAGCGTTTTCGC-AAAGAAATTGGCA 997
||.||.|||||.||.||.||.||.||||..||| || ||||||||.||.|
RBAM_003540__ 949 GGAGCGGTATTTCAACTTGTCCCTCAGCACTTT-GCAAAAGAAATCGGAA 997
BSNT_00584___ 998 TGGTGACGGGAATCGTCGGTGCGGCCGGAGGAATCGGAGGGTTTTTCCTG 1047
|||||||||||||||||||.||.|||||.||.||.||.||.||||||||.
RBAM_003540__ 998 TGGTGACGGGAATCGTCGGAGCAGCCGGCGGCATAGGGGGTTTTTTCCTT 1047
BSNT_00584___ 1048 CCGAACATCTTAGGATCTCTCAAACAGATGACAGGCACATATGCTATCGG 1097
|||||.||.||||||||..|.||.||||||||.||.||.|||||.|||||
RBAM_003540__ 1048 CCGAATATTTTAGGATCATTGAAGCAGATGACGGGAACGTATGCGATCGG 1097
BSNT_00584___ 1098 TTTTATCACGTTTTCCTGTATCGCGCTGCTGGCGTTTGCACTTGTGCTTG 1147
|||||||.|.||.||.||||||||..||||.||.||||..|||||.||.|
RBAM_003540__ 1098 TTTTATCTCTTTCTCATGTATCGCATTGCTCGCATTTGTGCTTGTTCTGG 1147
BSNT_00584___ 1148 CCGCAGGCTATTACTGGCGGAAAAGCTGGAGCGCGGAAAGCAGCCCGGCG 1197
||||||||||||..|||.|.|||||||...||.|.||||.|||.||.|||
RBAM_003540__ 1148 CCGCAGGCTATTTTTGGAGAAAAAGCTATGGCACTGAAAACAGTCCTGCG 1197
BSNT_00584___ 1198 GATGTTTAG 1206
||||||||.
RBAM_003540__ 1198 GATGTTTAA 1206
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