Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00579 and RBAM_003490

See Amino acid alignment / Visit BSNT_00579 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:19
# Commandline: needle
#    -asequence dna-align/BSNT_00579___nasF.1.9828.seq
#    -bsequence dna-align/RBAM_003490___nasF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00579___nasF-RBAM_003490___nasF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00579___nasF-RBAM_003490___nasF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00579___nasF
# 2: RBAM_003490___nasF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1495
# Identity:    1114/1495 (74.5%)
# Similarity:  1114/1495 (74.5%)
# Gaps:         104/1495 ( 7.0%)
# Score: 4134.5
# 
#
#=======================================

BSNT_00579___      1 ATGAAGAATGGAATCGTTTATTTCGTGGGAGCCGGACCCGGCGACCCAGG     50
                     |||||.||.||||||||.|||||.||.||.||||||||.||.|||||.||
RBAM_003490__      1 ATGAAAAACGGAATCGTATATTTTGTCGGTGCCGGACCAGGAGACCCGGG     50

BSNT_00579___     51 CCTGCTCACCATCAAAGGAAAACAGGCGCTCGAGGAAGCAGATGTCATTT    100
                     .|||.|||||.|.||||||||||||||.||.|||.||||.|||.|.||||
RBAM_003490__     51 GCTGATCACCGTAAAAGGAAAACAGGCTCTGGAGAAAGCGGATATTATTT    100

BSNT_00579___    101 TATATGACCGGCTCGCCAACCCGAAGCTGCTCGAATTTGCATCACCGGAT    150
                     |.||||||||||||||.|||||.|||.|.||.||||.|||.||||||||.
RBAM_003490__    101 TGTATGACCGGCTCGCAAACCCAAAGTTTCTTGAATATGCCTCACCGGAC    150

BSNT_00579___    151 TGCCAGTTTATTTATTGCGGAAAACTGCCAAACCGCCATTTTATGAAACA    200
                     ||||.|||.||||||||||||||.|||||..|||||||||||||||||||
RBAM_003490__    151 TGCCGGTTCATTTATTGCGGAAAGCTGCCCGACCGCCATTTTATGAAACA    200

BSNT_00579___    201 AAAAGAAATTAACGCCCTGCTGGTTGAAAAAGCATTAAATGGGTTAACCG    250
                     ....||.||.||.|||||||||.||||||||||.....|.||.||.||||
RBAM_003490__    201 GTCTGAGATAAATGCCCTGCTGATTGAAAAAGCGGCGGAGGGCTTCACCG    250

BSNT_00579___    251 TCGTTCGCTTGAAGGGCGGAGATCCGAGCGTATTCGGCAGGGTCGGCGAG    300
                     |.||.||||||||.||||||||.||.||.||.||||||||.||||||||.
RBAM_003490__    251 TTGTCCGCTTGAAAGGCGGAGACCCAAGTGTGTTCGGCAGAGTCGGCGAA    300

BSNT_00579___    301 GAAGCAGATGCTCTTCATGAGCACGGCATTCGCTATGAAATGGTGCCGGG    350
                     ||||||||.||.||||||.||||||||||.|||||.|||||||||||.||
RBAM_003490__    301 GAAGCAGAGGCGCTTCATCAGCACGGCATCCGCTACGAAATGGTGCCCGG    350

BSNT_00579___    351 AATCACCTCTGGAATTGCAGCGCCGCTATATGCGGGCATCCCCGTCACGC    400
                     .||||||||.|||||.|||||||||||.||||||||..||||||||||.|
RBAM_003490__    351 CATCACCTCGGGAATCGCAGCGCCGCTGTATGCGGGAGTCCCCGTCACTC    400

BSNT_00579___    401 ATCGGGATTTCGCATCGTCTTTTGCCATGATTACAGCGCATGATAAATCA    450
                     ||||.||||||||.|||||.||.||.|||||.||.||.|||||||.||||
RBAM_003490__    401 ATCGTGATTTCGCTTCGTCCTTCGCGATGATCACCGCTCATGATACATCA    450

BSNT_00579___    451 TTAAAAGGCACGCCGAACCTTGACTGGGAAGGGCTTGCACGAAGCGTACA    500
                     ||..|.||||.||||||.||.|||||||||||||||||.||||||||.||
RBAM_003490__    451 TTGCACGGCAGGCCGAATCTCGACTGGGAAGGGCTTGCCCGAAGCGTTCA    500

BSNT_00579___    501 AACCCTTGTTTTTTACATGGGTGTCAAGAACTTGTCTTATATTTGCCAGC    550
                     |||.|||||.|||||||||||.||.||.||..||||.|.|||.||||...
RBAM_003490__    501 AACGCTTGTGTTTTACATGGGCGTTAAAAATCTGTCATTTATATGCCGTA    550

BSNT_00579___    551 AGCTTATTTCATACGGGAAATCGCCTTCTGTCCCTGTCATTGTCATCCAA    600
                     ||||||.....|||||.|||||.|||||.||.||.||..|.|||||.|||
RBAM_003490__    551 AGCTTACGGAGTACGGAAAATCCCCTTCCGTTCCCGTACTCGTCATTCAA    600

BSNT_00579___    601 TGGGGAACGTGGGGCCGCCAGCGGAGTGTGAAAGGAACACTTGAGAACAT    650
                     |||||.||||||||.||.||||||||.||.||||||||.|||.||.|.||
RBAM_003490__    601 TGGGGGACGTGGGGGCGGCAGCGGAGCGTTAAAGGAACGCTTCAGGATAT    650

BSNT_00579___    651 TCAGCAAAAAGTGCAGGAG-CACCAGATCACAAACCCTGCCATTATTGTC    699
                     .||..|||||||.|| .|| ||..|.|||||.||||||||||||||.|||
RBAM_003490__    651 CCATGAAAAAGTTCA-AAGCCAAAACATCACCAACCCTGCCATTATCGTC    699

BSNT_00579___    700 ATCGGAGACATCGTCAACTTTCAAACACACAGCTGGTTTGAAAGCAAACC    749
                     |||||.||.||.|||||.|||||||||||||||||||||||||||||.||
RBAM_003490__    700 ATCGGTGATATTGTCAATTTTCAAACACACAGCTGGTTTGAAAGCAAGCC    749

BSNT_00579___    750 GCTCATCGGACGGCATTTGATGGTTGTGACTCATGGCGAAGATGAAGACC    799
                     |.|||||||.||||||.|.||||||||.|||||||||||.||.|||.|..
RBAM_003490__    750 GTTCATCGGGCGGCATATCATGGTTGTCACTCATGGCGATGAAGAACATA    799

BSNT_00579___    800 CGCTTG-CAGACAAGCTGCGCGATTCCGGCGCCGATGTCATCGAGTGGCC    848
                     | .||| ||||||||||||||||.|..|||||||||||.||.||.|||||
RBAM_003490__    800 C-ATTGACAGACAAGCTGCGCGAGTATGGCGCCGATGTTATTGAATGGCC    848

BSNT_00579___    849 GAAATGGCGGACCG---AAAACATGCCAGTCAATGAAGAAATTCTTCGAA    895
                     |||   |||||.||   ||||.|||||.|..||.|||.|.||.||  |||
RBAM_003490__    849 GAA---GCGGATCGTTAAAAAAATGCCCGCAAACGAAAACATCCT--GAA    893

BSNT_00579___    896 --AGATTGGCATCTTTGAAGACGTTTTTTTCACATCGCGCCGGGTGGTTT    943
                       ||||..|||.|||||||.|..|.|||||||||||.||||..|.|||.|
RBAM_003490__    894 ACAGATCAGCACCTTTGAACAACTATTTTTCACATCACGCCTTGCGGTAT    943

BSNT_00579___    944 GTGAATT-TTTCAGAGCACTGGCTTCTC-AGAAAATCGACATCCGCCAGC    991
                     |.||||| |||.|.| ||||||||| || ||.|.|||||||||||||.|.
RBAM_003490__    944 GCGAATTCTTTGACA-CACTGGCTT-TCAAGCAGATCGACATCCGCCGGG    991

BSNT_00579___    992 TGACAGCCAAACTGAGTGCAGCATCTGAACAAGCAAAGACGGAGCTTGA-   1040
                     ||||.||.|..||||.||||||..||||....|||||||||||.| ||| 
RBAM_003490__    992 TGACCGCAAGCCTGAATGCAGCGACTGAGGCCGCAAAGACGGAAC-TGAC   1040

BSNT_00579___   1041 AAAACGGGGGTTTCT----------TGTCA----------CCGCCACTCA   1070
                     |||||||||.|||||          |||||          ||||      
RBAM_003490__   1041 AAAACGGGGCTTTCTCCTATCCGAATGTCAAATTGATTCTCCGC------   1084

BSNT_00579___   1071 GCCTGATTCAGAGAAATGTCTTGTTGTCGGGAGCCGCCATGCAGTGGAAT   1120
                          |||||         ||..||||.||.|||||.||.||||..|||.
RBAM_003490__   1085 -----ATTCA---------CTCATTGTAGGAAGCCGTCAAGCAGCAGAAA   1120

BSNT_00579___   1121 TCATG-------CAAAAGCATGAATCCTGTTCGTTTTATATCACTCATGA   1163
                     .|.||       |||||.||||   ||    |||||||||||||.|||||
RBAM_003490__   1121 ACTTGTCAGACTCAAAATCATG---CC----CGTTTTATATCACCCATGA   1163

BSNT_00579___   1164 AAACGTCATAGATGACCGGTTCACCCACATGATTCAGCGTACCATCAGTG   1213
                     |.|..||..||||||.||||||||...||||||..|.||.||.|||||||
RBAM_003490__   1164 ACATATCGCAGATGAGCGGTTCACTTCCATGATCGAACGCACGATCAGTG   1213

BSNT_00579___   1214 AATCCCCGCTGCACATGGTCATTTG----CCCGAACAAGCTGTCCGTTCA   1259
                     |.||.||.|||||.|||.|.||.||    ..|.||.||    ||||.|||
RBAM_003490__   1214 AGTCTCCTCTGCAAATGATTATCTGTACTGGCAAAGAA----TCCGCTCA   1259

BSNT_00579___   1260 GCAATTGATCAATGGTGGCGAACAAATTGGCATTTCGCCGGAACCGTCAG   1309
                     |||.|||||||..|..||..|||||||.|||||.||.|||||.|||||||
RBAM_003490__   1260 GCATTTGATCAGCGCCGGAAAACAAATCGGCATATCACCGGATCCGTCAG   1309

BSNT_00579___   1310 CAAGCCGGCCTCCTATCGTCTGTATAGGCGATGAC-TCAGCTGCCGG-GG   1357
                     |||.|||.|||||..||.||||.||.|||||.||| || .|.||||| .|
RBAM_003490__   1310 CAAACCGCCCTCCCGTCATCTGCATGGGCGAAGACGTC-CCCGCCGGCTG   1358

BSNT_00579___   1358 CTTATGGATTCACAGCCATCCAAGAACAGGATGAATTGTTTGCTTTCATC   1407
                     |    ||.||.||.|||.|..||.|.|||||..|.||.|||||.||.||.
RBAM_003490__   1359 C----GGGTTTACCGCCGTGAAAAATCAGGAACAGTTATTTGCGTTTATA   1404

BSNT_00579___   1408 CAAAATCAACAAGCGGAAAAAAAA------CTCCTTCACAGCTGA   1446
                     |.||||         ||||..|||      |||.|||||||||||
RBAM_003490__   1405 CGAAAT---------GAAATGAAAGACATGCTCGTTCACAGCTGA   1440


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