Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00564 and RBAM_003420

See Amino acid alignment / Visit BSNT_00564 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence dna-align/BSNT_00564___cah.1.9828.seq
#    -bsequence dna-align/RBAM_003420___cah.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00564___cah-RBAM_003420___cah.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00564___cah-RBAM_003420___cah.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00564___cah
# 2: RBAM_003420___cah
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 972
# Identity:     747/972 (76.9%)
# Similarity:   747/972 (76.9%)
# Gaps:          30/972 ( 3.1%)
# Score: 2826.0
# 
#
#=======================================

BSNT_00564___      1 ATGCAACTATTCGATCTGCCGCTCGACCAATTGCAAACATATAAGCCTGA     50
                     ||||||.|||.|||..||||||||||||||.|||||||.|||||.||..|
RBAM_003420__      1 ATGCAATTATACGACTTGCCGCTCGACCAACTGCAAACCTATAAACCAAA     50

BSNT_00564___     51 AAAAACAGCACCGAAAGATTTTTCTGAGTTTTGGAAATTGTCTTTAGAGG    100
                     .|||||.||.||..|.||.|||||.||.||||||..||..||.|||.|.|
RBAM_003420__     51 TAAAACCGCTCCTCATGACTTTTCGGATTTTTGGGCATCATCATTACATG    100

BSNT_00564___    101 AACTTGCAAAAGTCCAAGCAGAACCTGATTTACAGCCGGTTGA---CTAT    147
                     |.||||||||.|...|.|||.|.|||||.||   |..||.|||   |||.
RBAM_003420__    101 AGCTTGCAAAGGAAGAGGCAAAGCCTGAATT---GAAGGCTGAAAGCTAC    147

BSNT_00564___    148 CCTGCTGACGGAGTAAAAGTGTACCGTCTCACATATAAAAGCTTCGGAAA    197
                     ||.||||||||.||.|||||.|.|||.||.|||||...|||||||||.||
RBAM_003420__    148 CCGGCTGACGGCGTGAAAGTATTCCGGCTGACATACCGAAGCTTCGGCAA    197

BSNT_00564___    198 CGCCCGCATTACCGGATGGTACGCAGTGCCTGACAAGGAAGGCCCGCATC    247
                     .||....|||...|||||||||||.||.||.|||..|.||||.|||||||
RBAM_003420__    198 GGCGGAAATTGAAGGATGGTACGCCGTTCCCGACCGGCAAGGACCGCATC    247

BSNT_00564___    248 CGGCGATGGTGAAATATCATGGCTACAATGCAAGCTATGATGGTGAGATT    297
                     ||||.||.|||||||||||.|||||.||.||.||||||||.||.||.||.
RBAM_003420__    248 CGGCCATCGTGAAATATCACGGCTATAACGCGAGCTATGACGGGGATATA    297

BSNT_00564___    298 CATGAAATGGTAAACTGGGCACTCCATGGCTACGCCGCATTCGGCATGCT    347
                     |||||.||.|||||.|||||.||.||.||.||.|||||.|||||||||||
RBAM_003420__    298 CATGACATCGTAAATTGGGCGCTTCACGGATATGCCGCGTTCGGCATGCT    347

BSNT_00564___    348 TGTCCGCGGCCAGCAGAGCAGCGAGGATACGAGTATTTCACCGCACGGTC    397
                     |||||||||||||||.||||||...|||||.||..|.|||||||||||.|
RBAM_003420__    348 TGTCCGCGGCCAGCACAGCAGCACAGATACAAGCGTCTCACCGCACGGAC    397

BSNT_00564___    398 ACGCTTTG---GGCTGGATGACGAAAGGAATTCTTGATAAAGATACATAC    444
                     |||   ||   |||||||||||||||||.|||.|.||||||||||||||.
RBAM_003420__    398 ACG---TGCCCGGCTGGATGACGAAAGGGATTTTAGATAAAGATACATAT    444

BSNT_00564___    445 TATTACCGCGGTGTTTATTTGGACGCCGTCCGCGCGCTTGAGGTCATCAG    494
                     |||||||||||.||.||.||.|||||||||||.||..|.||.||||||||
RBAM_003420__    445 TATTACCGCGGCGTGTACTTAGACGCCGTCCGGGCTTTGGAAGTCATCAG    494

BSNT_00564___    495 CAGTTTCGACGAGGTTGATGAAACAAGGATCGGTGTGACAGGAGGAAGCC    544
                     |.|.||.||.||.||.||||||||.|||||||..||.|..||.||.||||
RBAM_003420__    495 CGGCTTTGATGAAGTGGATGAAACGAGGATCGCCGTCATCGGCGGGAGCC    544

BSNT_00564___    545 A---AGGCGGAGGTTTAACCATTGCCGCAGCAGCGCTGTCAGACATTCCA    591
                     |   |||||||..||   |.||.|||||.||.||.||.||.||||||||.
RBAM_003420__    545 AGGGAGGCGGACTTT---CAATCGCCGCGGCGGCACTATCTGACATTCCG    591

BSNT_00564___    592 AAAGCCGCGGTT---GCCGATTATCCTTATTTAAGCAACTTCGAACGGGC    638
                     |.|   ||||||   |||||||||||||||||||||||.||.||.|||||
RBAM_003420__    592 AGA---GCGGTTGCGGCCGATTATCCTTATTTAAGCAATTTTGAGCGGGC    638

BSNT_00564___    639 CATTGATGTGGCGCTTGAACAGCCGTACCTTGAAATCAATTCCTTCTTCA    688
                     |||||||||.||.|||||..|||||||.|||||.||.||.|||||.||||
RBAM_003420__    639 CATTGATGTCGCTCTTGATGAGCCGTATCTTGAGATTAACTCCTTTTTCA    688

BSNT_00564___    689 GAAGAAATGGCAGCCCGGAAAC--AGAAGTGCAGGCGATGAAGACACTTT    736
                     |||..||.||||||||.|||||  |||||..|  ||||||||.|||||..
RBAM_003420__    689 GAAAGAACGGCAGCCCTGAAACGGAGAAGGCC--GCGATGAATACACTGG    736

BSNT_00564___    737 CATATTTCGATATTATGAATCTCGCTGACCGAGTGAAGGTGCCTGTCCTG    786
                     |.|||||.|||||.||||||||.||.|||||.||.||.||.||.||.||.
RBAM_003420__    737 CCTATTTTGATATCATGAATCTGGCGGACCGCGTAAAAGTTCCGGTGCTC    786

BSNT_00564___    787 ATGTCAATCGGCCTGATTGACAAGGTCACGCCGCCATCCACCGTGTTTGC    836
                     |||||.|||||.|||||||||...||.||.|||||.||.||.||.|||||
RBAM_003420__    787 ATGTCCATCGGGCTGATTGACCGCGTGACTCCGCCGTCGACGGTATTTGC    836

BSNT_00564___    837 CGCCTACAATCATTTGGAAACAGAGAAAGAGCTGAAGGTGTACCGCTACT    886
                     |||.|||||||||.|||||||.||.|||||..|||||||.|||||.||.|
RBAM_003420__    837 CGCGTACAATCATCTGGAAACGGAAAAAGAATTGAAGGTTTACCGGTATT    886

BSNT_00564___    887 TCGGACATGAGTATATCCCTGCTTTTCAAACGGAAAAACTTG-CTTTTTT    935
                     ||||||||||.||.||.|||.||||.||.||||||||.||.| ||||.|.
RBAM_003420__    887 TCGGACATGAATACATACCTTCTTTCCATACGGAAAAGCTGGCCTTTCTG    936

BSNT_00564___    936 TAAGCAGCATCTTAAAGGCTGA    957
                     .|||| ||||||.|||||||||
RBAM_003420__    937 AAAGC-GCATCTGAAAGGCTGA    957


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00564 and RBAM_003420

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
