Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00558 and RBAM_003410

See Amino acid alignment / Visit BSNT_00558 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence dna-align/BSNT_00558___aroK.1.9828.seq
#    -bsequence dna-align/RBAM_003410___aroK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00558___aroK-RBAM_003410___aroK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00558___aroK-RBAM_003410___aroK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00558___aroK
# 2: RBAM_003410___aroK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 564
# Identity:     462/564 (81.9%)
# Similarity:   462/564 (81.9%)
# Gaps:           6/564 ( 1.1%)
# Score: 1885.0
# 
#
#=======================================

BSNT_00558___      1 ATGAACGCTAAACGAGCCATCCCAGTAAGAGAAAGAAATATCGTCCTGAT     50
                     ||||||||.|||||.|||||.||.||||||||||||||||||||.|||||
RBAM_003410__      1 ATGAACGCAAAACGTGCCATTCCCGTAAGAGAAAGAAATATCGTACTGAT     50

BSNT_00558___     51 CGGATTCATGGGTGTAGGAAAAACAACAATCGGCCAATTGGTCGCTAAAA    100
                     |||||||||||||||.|||||.||||||||||||||..||||||||||.|
RBAM_003410__     51 CGGATTCATGGGTGTCGGAAAGACAACAATCGGCCAGCTGGTCGCTAAGA    100

BSNT_00558___    101 AATTATATAGAGATTTTATTGATATTGACCAGCAGATCGAAAAGGATTTC    150
                     ||.||||.|||||.||||||||||||||.|.||||||.||.||.||||||
RBAM_003410__    101 AACTATACAGAGACTTTATTGATATTGATCTGCAGATTGAGAAAGATTTC    150

BSNT_00558___    151 AATATGTCAATTCCTGAGATATTTGAGAAAAAGGGAGAAGACTTTTTCCG    200
                     ||||||||.||.|||||.||.|||||||||||.||.||.|.|||||||||
RBAM_003410__    151 AATATGTCCATCCCTGAAATGTTTGAGAAAAAAGGTGAGGCCTTTTTCCG    200

BSNT_00558___    201 GAAAACGGAGAAGGAATATATTTTAGACATCTGCCATCATAAACG--ATT    248
                     ..|.||.||.|||||.|||||.|||||.|||||||...||  |||  |||
RBAM_003410__    201 TCAGACTGAAAAGGACTATATATTAGATATCTGCCGCAAT--ACGAAATT    248

BSNT_00558___    249 CAAAATCGTATCTCTGGGCGGGGGATCTTTTAAACAAGAAGAAATCAGAA    298
                     |||.|||||.||.||.||.||.||.||.|||||||||||.|||||||||.
RBAM_003410__    249 CAAGATCGTGTCGCTTGGGGGCGGTTCGTTTAAACAAGAGGAAATCAGAC    298

BSNT_00558___    299 ATTGCTGTCTGGAAAACTGTCTCGTGCTTCATCTGGACCTGTCATGGGAG    348
                     |.|||||.||.|||||||||||||||||.|||||.||..|.|||||||||
RBAM_003410__    299 AGTGCTGCCTTGAAAACTGTCTCGTGCTCCATCTTGATTTATCATGGGAG    348

BSNT_00558___    349 AACTGGAAGCAGCGCGCGGATTTATTGATCGAAAGCCGCCCTGTACTGCA    398
                     ||.|||||||||||.||.|||.|..||||.||||||||.||.||.|||||
RBAM_003410__    349 AATTGGAAGCAGCGGGCTGATCTGCTGATTGAAAGCCGTCCCGTTCTGCA    398

BSNT_00558___    399 TAACCGTTCAATGGATGAAATGGAACAGCTGTTTAACGAAAG-AAAAGTC    447
                     |||||||||.||||||||||||.|.|||||.||||||||..| .|||| |
RBAM_003410__    399 TAACCGTTCCATGGATGAAATGCAGCAGCTCTTTAACGAGCGCCAAAG-C    447

BSNT_00558___    448 ATTTATGACAAGCACAATTCAAAAGTGGCAACAGACAACCTTTCCCCGGA    497
                     ||.|||||.||.||.||||||||||||||.||.||.||.||....||.||
RBAM_003410__    448 ATCTATGATAAACATAATTCAAAAGTGGCGACGGATAATCTGGAACCAGA    497

BSNT_00558___    498 AGAGGTTGCCGATTACATTGTTGAGACATTAAAAATTGGCTGGGATCTTT    547
                     |||..|.||||||||.||.||.||.||.||||||||.||||||||.||.|
RBAM_003410__    498 AGAAATAGCCGATTATATCGTAGAAACGTTAAAAATCGGCTGGGACCTGT    547

BSNT_00558___    548 ATCAGCCGATGTAA    561
                     ||||||||||||||
RBAM_003410__    548 ATCAGCCGATGTAA    561


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