Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00556 and RBAM_003380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00556___tmrB.1.9828.seq
# -bsequence dna-align/RBAM_003380___tmrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00556___tmrB-RBAM_003380___tmrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00556___tmrB-RBAM_003380___tmrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00556___tmrB
# 2: RBAM_003380___tmrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity: 468/612 (76.5%)
# Similarity: 468/612 (76.5%)
# Gaps: 33/612 ( 5.4%)
# Score: 1814.5
#
#
#=======================================
BSNT_00556___ 1 ---ATGATCATTTGGATAAACGGGGCATTCGGTTCGGGAAAAACACAAAC 47
|||||||||||||||||.|||||.||||||||.||||||||||||||
RBAM_003380__ 1 ATGATGATCATTTGGATAAATGGGGCTTTCGGTTCCGGAAAAACACAAAC 50
BSNT_00556___ 48 AGCCTTCGAACTGCACAGAAGGCTGAGCCCATCTTACGTGTATGATCCCG 97
|||.||.||||||||||||||.||||..||.||||||||.||||||||.|
RBAM_003380__ 51 AGCGTTTGAACTGCACAGAAGACTGAAACCGTCTTACGTATATGATCCTG 100
BSNT_00556___ 98 AGAAAATGGGTTTTGCGCTGCGCTCCATGGTGCCGCAGGAGATCGCAAAG 147
|.||.|||||.||||||.||||.||.|||.|.||||..||.|||||..|.
RBAM_003380__ 101 AAAAGATGGGGTTTGCGATGCGTTCGATGATACCGCCCGATATCGCTGAA 150
BSNT_00556___ 148 GACGATTTTCAAAGCTATCCTTTATGGCGGGCGTTCAATTACAGTTTGCT 197
||.||.|||||||||||.|||.|.|||||||..|||||||||||..||||
RBAM_003380__ 151 GATGACTTTCAAAGCTACCCTCTGTGGCGGGAATTCAATTACAGCATGCT 200
BSNT_00556___ 198 AGCTTCTCTGACAGATACATACCGCGGCATCCTTATTGTGCCTATGACGA 247
..|.|.|.||.||||||||||.|..||||||.|.||||||||.|||||.|
RBAM_003380__ 201 TTCCTATTTGTCAGATACATATCAGGGCATCATCATTGTGCCCATGACCA 250
BSNT_00556___ 248 TTGTAC--ACCCTGAATACTTCAATGAGATCATCGGCAGGCTCAGACAGG 295
| ||| ||..|.||||||||.||||.||.|||.|||||||.|||||||
RBAM_003380__ 251 T--TACGAACGATCAATACTTCCATGACATTATCAGCAGGCTGAGACAGG 298
BSNT_00556___ 296 AAGGCAGGATCGTTCACCACTTTACACTAATGGCTTCAAAGGAAACCTTG 345
|.|||.|||.|.|||||||||||||.||..||||||||||||||||.|||
RBAM_003380__ 299 ATGGCCGGACCATTCACCACTTTACCCTGCTGGCTTCAAAGGAAACATTG 348
BSNT_00556___ 346 TTAAAAAGGCTGCGCACCAGAGCAGAAGGAAAAAACTCATGGGCCGCCAA 395
.|.|||.|.||||||||||||||.||||||||||||||.||||||||.||
RBAM_003380__ 349 CTGAAACGCCTGCGCACCAGAGCGGAAGGAAAAAACTCCTGGGCCGCAAA 398
BSNT_00556___ 396 ACAAATTGACCGCTGTGTTGAAGGATTATCATCACCCATTTTTGA----- 440
||||||.|||||||| .||||.||.|| |.|.|||
RBAM_003380__ 399 ACAAATCGACCGCTG-----------CATCAACAGCC-TGTCTGATAGCC 436
BSNT_00556___ 441 -------GGACCACATTCAAACAGACAACCTGTCGATTCAGGATGTGGCA 483
.||.||..|.||.||||||.|..||||.||||||.|.||.|||
RBAM_003380__ 437 TCTTCACAGAACATCTCCATACAGACCAAATGTCTATTCAGCAGGTCGCA 486
BSNT_00556___ 484 GAGAAC-ATTGCCGCGAGAGCCGAACTCCCATTAGATCCTGATACAAGAG 532
|| ||| ||.||.||...|||..|.||.||..|.||.||||||.|.||||
RBAM_003380__ 487 GA-AACGATCGCTGCCCAAGCAAATCTGCCTCTTGAGCCTGATTCGAGAG 535
BSNT_00556___ 533 GCAGCCTCCGAAGGTTCGCCGACAGATTAATGGTAAAGCTGAATCATATC 582
|.|||||.|||||.|||.||||||||||.|||||.|||||||||||||||
RBAM_003380__ 536 GAAGCCTTCGAAGATTCACCGACAGATTGATGGTGAAGCTGAATCATATC 585
BSNT_00556___ 583 CGCATCAAATAA 594
||.|||||||||
RBAM_003380__ 586 CGTATCAAATAA 597
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