Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00555 and RBAM_003360

See Amino acid alignment / Visit BSNT_00555 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence dna-align/BSNT_00555___nadE.1.9828.seq
#    -bsequence dna-align/RBAM_003360___nadE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00555___nadE-RBAM_003360___nadE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00555___nadE-RBAM_003360___nadE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00555___nadE
# 2: RBAM_003360___nadE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     648/821 (78.9%)
# Similarity:   648/821 (78.9%)
# Gaps:           4/821 ( 0.5%)
# Score: 2524.0
# 
#
#=======================================

BSNT_00555___      1 ATGAGCATGCAGGAAAAGATTATGCGTGAGTTACATGTGAAGCCCTCAAT     50
                     ||||||||.|||.||.|.||||||..|||..|.|||||.|||||||||||
RBAM_003360__      1 ATGAGCATCCAGAAACAAATTATGAATGATCTCCATGTAAAGCCCTCAAT     50

BSNT_00555___     51 TGATCCAAAGCAAGAAATTGAGGACCGAGTCAATTTTTTAAAACAATATG    100
                     ||||||.||.|||||||||||||||.||||.||.|||.|.|||||||||.
RBAM_003360__     51 TGATCCGAAACAAGAAATTGAGGACAGAGTGAACTTTCTGAAACAATATT    100

BSNT_00555___    101 TAAAGAAAACTGGTGCTAAAGGCTTTGTATTGGGAATCAGCGGCGGCCAG    150
                     |.||.|||||.|||||.|||||||||||..|.||.||||||||.||.|||
RBAM_003360__    101 TGAAAAAAACAGGTGCCAAAGGCTTTGTGCTCGGCATCAGCGGGGGGCAG    150

BSNT_00555___    151 GATTCAACACTTGCGGGAAGACTCGCTCAGCTTGCGGTGGAGAGCATTCG    200
                     |||||.||.|||||||||.|.|||||.||..|.||||..||||||||..|
RBAM_003360__    151 GATTCCACGCTTGCGGGACGCCTCGCCCAATTGGCGGCTGAGAGCATCAG    200

BSNT_00555___    201 CGAGGAGGGCGGAGACGCTCAATTTATCGCTGTCCGTCTTCCGCATGGCA    250
                     .||.||.||||||.|.||..||||||||||.|||||.||||||||.||||
RBAM_003360__    201 AGAAGAAGGCGGAAATGCGGAATTTATCGCCGTCCGCCTTCCGCACGGCA    250

BSNT_00555___    251 CACAGCAGGATGAAGACGATGCCCAGCTTGCTTTGAAGTTTATTAAGCCG    300
                     |||||||||||||.||.||.|||||..|.||..|.||.||.||||||||.
RBAM_003360__    251 CACAGCAGGATGAGGATGACGCCCAAATGGCGCTCAAATTCATTAAGCCT    300

BSNT_00555___    301 GATAAATCATGGAAGTTTGATATTAAATCAACAGTCAGCGCTTTTTCTGA    350
                     ||||||||.||||..|||||||||||.||..|.||||||||.||..||||
RBAM_003360__    301 GATAAATCTTGGACATTTGATATTAAGTCCGCTGTCAGCGCGTTCACTGA    350

BSNT_00555___    351 TCAGTATCAGCAGGAAACAGGCGATCAGCTGACTGACTTTAATAAAGGAA    400
                     ||||||..|..|.||.||.||.|||||||||.||||||||||.|||||||
RBAM_003360__    351 TCAGTACAAAAAAGACACGGGAGATCAGCTGTCTGACTTTAACAAAGGAA    400

BSNT_00555___    401 ACGTAAAAGCAAGAACAAGAATGATCGCGCAATACGCGATCGGCGGCCAG    450
                     |.|||||.||.||||..|||||||||||.|||||.||.||||||||.||.
RBAM_003360__    401 ATGTAAAGGCCAGAATGAGAATGATCGCTCAATATGCCATCGGCGGACAA    450

BSNT_00555___    451 GAAGGCCTTCTTGTGTTAGGAACAGACCATGCTGCTGAAGCAGTGACTGG    500
                     ||.||.||.|||||..|.|||||.||||||||.||.||.||.||||||||
RBAM_003360__    451 GAGGGGCTGCTTGTCATCGGAACCGACCATGCGGCCGAGGCGGTGACTGG    500

BSNT_00555___    501 TTTCTTTACGAAGTACGGTGACGGCGGAGCAGACCTCCTGCCGCTGACAG    550
                     ||||||.|||||.|||||||||||||||||.||.||.|||||||||||.|
RBAM_003360__    501 TTTCTTCACGAAATACGGTGACGGCGGAGCTGATCTGCTGCCGCTGACCG    550

BSNT_00555___    551 GCTTGACGAAGCGCCAGGGAAGAACCCTGCTGA-AAGAGCTGGGTGCACC    599
                     |.||.|||||.||||||||.|| ||..|..|.| |||||||.||.||.||
RBAM_003360__    551 GATTAACGAAACGCCAGGGCAG-ACGTTTATTAGAAGAGCTCGGCGCGCC    599

BSNT_00555___    600 GGAACGCTTATACTTAAAAGAGCCGACTGCCGATCTGCTCGACGAAAAAC    649
                     |||||||.|.||.||.|||...|||||.|||||||||||.||.|||||||
RBAM_003360__    600 GGAACGCCTGTATTTGAAATTACCGACGGCCGATCTGCTTGATGAAAAAC    649

BSNT_00555___    650 CGCAGCAGTCGGATGAAACAGAGCTTGGCATTTCCTACGACGAGATTGAC    699
                     ||||||||.|.|||||.||.||.||.|||||..|.|||.|.||.|||||.
RBAM_003360__    650 CGCAGCAGACTGATGAGACCGAACTCGGCATCACATACAATGACATTGAT    699

BSNT_00555___    700 GATTATCTCGAAGGAAAAGAAGTATCAGCGAAAGT-ATCAGAAGCGCTGG    748
                     ||||||.|.|||||.||.||.||.||..|..|||| || .||.|||||||
RBAM_003360__    700 GATTATTTAGAAGGCAAGGACGTTTCTTCCGAAGTGAT-TGAGGCGCTGG    748

BSNT_00555___    749 AAAAACGCTACAGCATGACTGAACATAAACGCCAGGTTCCGGCGTCTATG    798
                     ||||||||||...||..||.||.|||||.||||||||.|||||.||.|||
RBAM_003360__    749 AAAAACGCTATCTCAGTACGGAGCATAAGCGCCAGGTGCCGGCATCAATG    798

BSNT_00555___    799 TTTGATGACTGGTGGAAATAA    819
                     ||||||||.|||||||||||.
RBAM_003360__    799 TTTGATGATTGGTGGAAATAG    819


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