Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00535 and RBAM_003270

See Amino acid alignment / Visit BSNT_00535 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:17
# Commandline: needle
#    -asequence dna-align/BSNT_00535.1.9828.seq
#    -bsequence dna-align/RBAM_003270___ycgB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00535-RBAM_003270___ycgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00535-RBAM_003270___ycgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00535
# 2: RBAM_003270___ycgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 494
# Identity:     407/494 (82.4%)
# Similarity:   407/494 (82.4%)
# Gaps:           7/494 ( 1.4%)
# Score: 1673.5
# 
#
#=======================================

BSNT_00535         1 ATGAATAATCTGCATAATAGACTTTCAGGCGTGAATGGGAAAAATAAGAG     50
                     ||||||.|.|..|..||..||||||||..|||||||||.||.|.|.||||
RBAM_003270__      1 ATGAATCAGCGTCGGAACGGACTTTCAAACGTGAATGGAAAGAGTGAGAG     50

BSNT_00535        51 GGTAAAAGAAAAAGAACAAAAAATCTGGTCGGAGATTGGGATGATAGCGG    100
                     .||.|||||.|||||||.||..||.|||||.||..|.||.|||.|.|.||
RBAM_003270__     51 TGTGAAAGAGAAAGAACGAATGATTTGGTCAGAAGTCGGAATGCTTGTGG    100

BSNT_00535       101 GAGCATTTGCGCTGCTTGATGTGATCATCCGCGGCATTATGTT-TGAA-T    148
                     |..||.|..|..|||||||..|.|||.|.|||||..|  |||| |||| |
RBAM_003270__    101 GCACACTGTCTTTGCTTGACATCATCGTACGCGGACT--TGTTCTGAACT    148

BSNT_00535       149 TTCCGTTTAAAGAATGGGCTGCAAGCCTTGTGTTTTTGTTCATCATTATC    198
                     .||||||||..||||||||.|.||||.|.|.|.||||.|||||.||.||.
RBAM_003270__    149 GTCCGTTTAGGGAATGGGCCGGAAGCTTGGCGGTTTTCTTCATTATAATT    198

BSNT_00535       199 TTATATTACTGCATCAGGGCTGCGGCATCCGGAATGCTCATGCCGAGAAT    248
                     .|.|||||.|||||||||||.|.|||.||.||||||||||||||||||||
RBAM_003270__    199 GTTTATTATTGCATCAGGGCGGGGGCGTCGGGAATGCTCATGCCGAGAAT    248

BSNT_00535       249 AGACACCAAAGAAGAACTGCAAAAACGGGTGAAGCAGCAGCGAATAGAAT    298
                     ||||||||||||||||||||||||.|||||||||||||||||.|||||.|
RBAM_003270__    249 AGACACCAAAGAAGAACTGCAAAAGCGGGTGAAGCAGCAGCGGATAGATT    298

BSNT_00535       299 CAATTGCGGTCGCCTTTGCGGTAGTGGTGCTTACGATGTACGACAGGGGG    348
                     |||||||||||.|.||||||||||.||.|.||||||||||||||||||||
RBAM_003270__    299 CAATTGCGGTCACTTTTGCGGTAGCGGCGATTACGATGTACGACAGGGGG    348

BSNT_00535       349 ATTCCCCATACATTCTTCGCTTGGCTGAAAATGATTCTTCTTTTTATCGT    398
                     .||||||||||||||||.|||||||||||||||||..|||||||||||||
RBAM_003270__    349 TTTCCCCATACATTCTTTGCTTGGCTGAAAATGATCTTTCTTTTTATCGT    398

BSNT_00535       399 CTGCGGCGGCGTTCTGTTTCTGCTTCGGTATGTGATTGTGAAGCTGGCTT    448
                     ||||||.|||.||||||||||||||||||||||.||||||||||||.|||
RBAM_003270__    399 CTGCGGAGGCATTCTGTTTCTGCTTCGGTATGTCATTGTGAAGCTGTCTT    448

BSNT_00535       449 ACAGAAGAGCGGTAAAAGAAGAAATAAAAAAGAAATCATCTTGA    492
                     |||||||||||.|||   ||||||||||||||||||||||||||
RBAM_003270__    449 ACAGAAGAGCGATAA---AAGAAATAAAAAAGAAATCATCTTGA    489


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